View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12737_low_21 (Length: 304)
Name: NF12737_low_21
Description: NF12737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12737_low_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 15 - 248
Target Start/End: Complemental strand, 36526173 - 36525940
Alignment:
| Q |
15 |
ctatcattctcatgtcacattcattaacgtcgcaatgcatatgccactttggggggctatctgttttatgttatccagtatttttatattgctctctcta |
114 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36526173 |
ctatcattctcatgtcacattcactaacgtcgcaatgcatatgccactttggggggctatctgttttatgttttccagtatttttatattgctctctcta |
36526074 |
T |
|
| Q |
115 |
tacggtagtaatatagatagtaacaatagcatcgtggggaaaacgaagaataacccatcgatgtagtccgtaaactaccacttacactccaatttgaagt |
214 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||| |||||||| ||| |||||| ||||||||||| |
|
|
| T |
36526073 |
tacgatagtaatatagatagtaacaatagcattgcagggaaaacgaagaataaaccatcgatgtagtctgtaaactatcacctacacttcaatttgaagt |
36525974 |
T |
|
| Q |
215 |
ccaaattatgcaaatataattagtccctaaataa |
248 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||| |
|
|
| T |
36525973 |
ctaaattatgtaaatataattagtccctaaataa |
36525940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 36533409 - 36533354
Alignment:
| Q |
28 |
gtcacattcattaacgtcgcaatgcatatgccactttggggggctatctgttttat |
83 |
Q |
| |
|
|||||||||| |||||| |||||| | ||||||||| ||||| ||||||||||||| |
|
|
| T |
36533409 |
gtcacattcactaacgttgcaatgtagatgccacttcgggggcctatctgttttat |
36533354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 300
Target Start/End: Complemental strand, 36525963 - 36525926
Alignment:
| Q |
263 |
taaatataattagaccctaaataatatagatatgtcaa |
300 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
36525963 |
taaatataattagtccctaaataatataaatatgtcaa |
36525926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 36553590 - 36553513
Alignment:
| Q |
20 |
attctcatgtcacattcattaacgtcgcaatgcatatgccactttggggggctatctgttttatgttatccagtattt |
97 |
Q |
| |
|
||||||| |||| || || ||| ||| ||||||| ||||||||||||||| |||| |||||||| || |||| ||||| |
|
|
| T |
36553590 |
attctcaagtcatatccactaatgtcacaatgcaaatgccactttgggggcctatttgttttatattgtccaatattt |
36553513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University