View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12737_low_23 (Length: 291)

Name: NF12737_low_23
Description: NF12737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12737_low_23
NF12737_low_23
[»] chr3 (20 HSPs)
chr3 (160-275)||(3355843-3355958)
chr3 (160-275)||(3723010-3723121)
chr3 (1-164)||(3357776-3357942)
chr3 (3-164)||(3200508-3200672)
chr3 (160-268)||(3309117-3309225)
chr3 (160-266)||(3320721-3320827)
chr3 (165-266)||(3302431-3302532)
chr3 (174-266)||(3219957-3220049)
chr3 (160-266)||(3202478-3202584)
chr3 (105-162)||(30990068-30990125)
chr3 (85-164)||(3304352-3304431)
chr3 (105-162)||(22104357-22104414)
chr3 (105-162)||(22179051-22179108)
chr3 (105-164)||(3221878-3221937)
chr3 (105-164)||(3280660-3280719)
chr3 (103-162)||(22052378-22052437)
chr3 (105-162)||(21936787-21936844)
chr3 (105-162)||(22010468-22010525)
chr3 (105-162)||(22034163-22034220)
chr3 (105-162)||(22186634-22186691)
[»] chr1 (2 HSPs)
chr1 (61-156)||(41947633-41947731)
chr1 (105-164)||(49386842-49386901)


Alignment Details
Target: chr3 (Bit Score: 104; Significance: 7e-52; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 160 - 275
Target Start/End: Complemental strand, 3355958 - 3355843
Alignment:
Q  160 gatgtttgaagtcattacagaagctttactttttggaagcaaatcgaggtggaatagaccttatccaggagctcaaaatgctgacacaattaaggaaatt 259  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  3355958 gatgtttgaagtcattacagaaactttactttttggaagcaaatcgaggtggaatagaccttatccaggagctcaagatgctgacacaattaaggaagtt 3355859  T
Q  260 aggcatacgttgtatg 275  Q
    ||||||||||||||||    
T  3355858 aggcatacgttgtatg 3355843  T

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Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 160 - 275
Target Start/End: Original strand, 3723010 - 3723121
Alignment:
Q  160 gatgtttgaagtcattacagaagctttactttttggaagcaaatcgaggtggaatagaccttatccaggagctcaaaatgctgacacaattaaggaaatt 259  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    |    
T  3723010 gatgtttgaagtcattacagaaactttactttttggaagcaaatcgaggtggaatagaccttatccaggagctcaagatgctgacacaattaagg----t 3723105  T
Q  260 aggcatacgttgtatg 275  Q
    ||||||||||||||||    
T  3723106 aggcatacgttgtatg 3723121  T

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Target: chr3; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 3357942 - 3357776
Alignment:
Q  1 ttgattgaggaagacttcaaagacatcaaggatgaacttgagaacatccaattatcacttaaggatgcagacacaaaggctgcagatga---aagagggg 97  Q
    |||||||||  | |||||||||||||||| ||||||||||||| ||||||||| ||||| |||||||||||||||| |||||| |||||   | |||| |    
T  3357942 ttgattgagagatacttcaaagacatcaaagatgaacttgagatcatccaattctcactcaaggatgcagacacaagggctgctgatgaaggaggaggag 3357843  T
Q  98 gagcaaatgaaggagtcaaaacatgggtaaggcagctgagggaagcatcttttcgcatagaagatgt 164  Q
    |||| || |||||| ||||||| ||||| | |||||| || ||||||||||||||||||||||||||    
T  3357842 gagccaacgaaggaatcaaaacttgggtgaagcagctaagagaagcatcttttcgcatagaagatgt 3357776  T

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Target: chr3; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 3 - 164
Target Start/End: Original strand, 3200508 - 3200672
Alignment:
Q  3 gattgaggaagacttcaaagacatcaaggatgaacttgagaacatccaattatcacttaaggatgcagacacaaaggctgcagatga---aagaggggga 99  Q
    |||||||  ||| ||||||||||||||  |||||||||||| ||| ||| | ||||| ||||||||||||||||||||||| |||||   | |||| |||    
T  3200508 gattgagagagaattcaaagacatcaaatatgaacttgagagcattcaagtttcactcaaggatgcagacacaaaggctgctgatgaaggaggaggagga 3200607  T
Q  100 gcaaatgaaggagtcaaaacatgggtaaggcagctgagggaagcatcttttcgcatagaagatgt 164  Q
    || || |||||| ||||||| ||||| | |||||| || ||||||||||||||||||||||||||    
T  3200608 gccaacgaaggaatcaaaacttgggtgaagcagctaagagaagcatcttttcgcatagaagatgt 3200672  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 268
Target Start/End: Complemental strand, 3309225 - 3309117
Alignment:
Q  160 gatgtttgaagtcattacagaagctttactttttggaagcaaatcgaggtggaatagaccttatccaggagctcaaaatgctgacacaattaaggaaatt 259  Q
    |||| |||||||||||||||||||||||||||||||||||  |||  |||| | ||| |||||||   |||||||||||| ||||||| |||||||| ||    
T  3309225 gatgcttgaagtcattacagaagctttactttttggaagccgatcatggtgcattaggccttatcagagagctcaaaatgttgacacagttaaggaagtt 3309126  T
Q  260 aggcatacg 268  Q
    |||||||||    
T  3309125 aggcatacg 3309117  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 266
Target Start/End: Complemental strand, 3320827 - 3320721
Alignment:
Q  160 gatgtttgaagtcattacagaagctttactttttggaagcaaatcgaggtggaatagaccttatccaggagctcaaaatgctgacacaattaaggaaatt 259  Q
    |||||||||  || ||||| ||||||||||||||||||||| |||  | |||||||||||||||||  |||||||||| | ||||||| |||||||| ||    
T  3320827 gatgtttgatatctttacaaaagctttactttttggaagcagatcatgatggaatagaccttatccgagagctcaaaaggttgacacagttaaggaagtt 3320728  T
Q  260 aggcata 266  Q
    |||||||    
T  3320727 aggcata 3320721  T

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Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 165 - 266
Target Start/End: Complemental strand, 3302532 - 3302431
Alignment:
Q  165 ttgaagtcattacagaagctttactttttggaagcaaatcgaggtggaatagaccttatccaggagctcaaaatgctgacacaattaaggaaattaggca 264  Q
    ||||| || ||||| |||||||||||||||||||||||||  ||||||||| | |||||||| |||||||||||| ||| ||| |||||||| || ||||    
T  3302532 ttgaaatctttacaaaagctttactttttggaagcaaatcatggtggaataaagcttatccaagagctcaaaatgttgaaacagttaaggaagttgggca 3302433  T
Q  265 ta 266  Q
    ||    
T  3302432 ta 3302431  T

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Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 174 - 266
Target Start/End: Complemental strand, 3220049 - 3219957
Alignment:
Q  174 ttacagaagctttactttttggaagcaaatcgaggtggaatagaccttatccaggagctcaaaatgctgacacaattaaggaaattaggcata 266  Q
    ||||| ||||||||||||||||||||| |||  |||||||||||||||||| | |||||||||| | ||| ||| |||||||| |||||||||    
T  3220049 ttacaaaagctttactttttggaagcagatcatggtggaatagaccttatcgaagagctcaaaaagttgaaacagttaaggaagttaggcata 3219957  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 266
Target Start/End: Original strand, 3202478 - 3202584
Alignment:
Q  160 gatgtttgaagtcattacagaagctttactttttggaagcaaatcgaggtggaatagaccttatccaggagctcaaaatgctgacacaattaaggaaatt 259  Q
    |||||||||| || || ||  ||||||||||||| || ||| |||  ||||||||||||||||| || |||||||||||| ||| | | |||||||| ||    
T  3202478 gatgtttgaaatctttgcaacagctttactttttagatgcagatcatggtggaatagaccttattcaagagctcaaaatgttgagaaagttaaggaagtt 3202577  T
Q  260 aggcata 266  Q
    |||||||    
T  3202578 aggcata 3202584  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 30990125 - 30990068
Alignment:
Q  105 tgaaggagtcaaaacatgggtaaggcagctgagggaagcatcttttcgcatagaagat 162  Q
    ||||||||||||||||||||| | |||| | ||||||||| |||||||||||||||||    
T  30990125 tgaaggagtcaaaacatgggtgaagcaggttagggaagcagcttttcgcatagaagat 30990068  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 164
Target Start/End: Complemental strand, 3304431 - 3304352
Alignment:
Q  85 gatgaaagagggggagcaaatgaaggagtcaaaacatgggtaaggcagctgagggaagcatcttttcgcatagaagatgt 164  Q
    |||||| |||| ||| | ||||||||||||||||||||||| | |||  | || |||| |||||||||||||||||||||    
T  3304431 gatgaaggaggaggaaccaatgaaggagtcaaaacatgggtgaagcaagtaagagaagtatcttttcgcatagaagatgt 3304352  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 22104357 - 22104414
Alignment:
Q  105 tgaaggagtcaaaacatgggtaaggcagctgagggaagcatcttttcgcatagaagat 162  Q
    ||||||||||||||||||||| | ||| || |||| |||| |||||||||||||||||    
T  22104357 tgaaggagtcaaaacatgggtgaagcaacttagggtagcagcttttcgcatagaagat 22104414  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 22179051 - 22179108
Alignment:
Q  105 tgaaggagtcaaaacatgggtaaggcagctgagggaagcatcttttcgcatagaagat 162  Q
    ||||||||||||||||||||| | ||| || |||| |||| |||||||||||||||||    
T  22179051 tgaaggagtcaaaacatgggtgaagcaacttagggtagcagcttttcgcatagaagat 22179108  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 3221937 - 3221878
Alignment:
Q  105 tgaaggagtcaaaacatgggtaaggcagctgagggaagcatcttttcgcatagaagatgt 164  Q
    ||||||||| ||||| ||||| | |||||| || ||||||||||||| ||||||||||||    
T  3221937 tgaaggagttaaaacttgggtgaagcagctaagagaagcatcttttcacatagaagatgt 3221878  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 3280719 - 3280660
Alignment:
Q  105 tgaaggagtcaaaacatgggtaaggcagctgagggaagcatcttttcgcatagaagatgt 164  Q
    ||||||||| ||||| ||||| | |||||| || |||||||||||||| |||||||||||    
T  3280719 tgaaggagttaaaacttgggtgaagcagctaagagaagcatcttttcgtatagaagatgt 3280660  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 162
Target Start/End: Original strand, 22052378 - 22052437
Alignment:
Q  103 aatgaaggagtcaaaacatgggtaaggcagctgagggaagcatcttttcgcatagaagat 162  Q
    |||||||||||||||| |||||| | ||| || ||||| ||| |||||||||||||||||    
T  22052378 aatgaaggagtcaaaatatgggtgaagcaacttagggaggcagcttttcgcatagaagat 22052437  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 21936787 - 21936844
Alignment:
Q  105 tgaaggagtcaaaacatgggtaaggcagctgagggaagcatcttttcgcatagaagat 162  Q
    ||||||||| ||||| ||||| | |||||| ||||||||| ||||| |||||||||||    
T  21936787 tgaaggagttaaaacttgggtgaagcagcttagggaagcagctttttgcatagaagat 21936844  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 22010468 - 22010525
Alignment:
Q  105 tgaaggagtcaaaacatgggtaaggcagctgagggaagcatcttttcgcatagaagat 162  Q
    |||||||||||||| |||||| | ||| || ||||||||| |||||| ||||||||||    
T  22010468 tgaaggagtcaaaatatgggtgaagcaacttagggaagcagcttttcacatagaagat 22010525  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 22034163 - 22034220
Alignment:
Q  105 tgaaggagtcaaaacatgggtaaggcagctgagggaagcatcttttcgcatagaagat 162  Q
    |||||||||||||| |||||| | ||| || ||||| ||| |||||||||||||||||    
T  22034163 tgaaggagtcaaaatatgggtgaagcaacttagggaggcagcttttcgcatagaagat 22034220  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 22186634 - 22186691
Alignment:
Q  105 tgaaggagtcaaaacatgggtaaggcagctgagggaagcatcttttcgcatagaagat 162  Q
    |||||||||||||| |||||| | ||| || ||||||||| |||||| ||||||||||    
T  22186634 tgaaggagtcaaaatatgggtgaagcaacttagggaagcagcttttcacatagaagat 22186691  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 61 - 156
Target Start/End: Complemental strand, 41947731 - 41947633
Alignment:
Q  61 aaggatgcagacacaaaggctgcagatgaaagagggggagcaaa---tgaaggagtcaaaacatgggtaaggcagctgagggaagcatcttttcgcata 156  Q
    |||||||||||||||| |||||  |||||| |||  |||| | |   ||||||||||||||||||||| | ||||||||  ||||||||||||||||||    
T  41947731 aaggatgcagacacaagggctgttgatgaaggagaaggaggatatgctgaaggagtcaaaacatgggtgaagcagctgaaagaagcatcttttcgcata 41947633  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 49386901 - 49386842
Alignment:
Q  105 tgaaggagtcaaaacatgggtaaggcagctgagggaagcatcttttcgcatagaagatgt 164  Q
    ||||||||||| ||| ||||| | | |||| || ||||||||||||||||||||||||||    
T  49386901 tgaaggagtcataacttgggtgaagtagcttagagaagcatcttttcgcatagaagatgt 49386842  T

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