View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12737_low_24 (Length: 290)
Name: NF12737_low_24
Description: NF12737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12737_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 34465825 - 34465571
Alignment:
| Q |
19 |
tggacggaactaccaaatcatcaaatgatttgtcttaacattaataacagaattgcattcannnnnnncataacattgaggttgccagatttatactcag |
118 |
Q |
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| T |
34465825 |
tggacggaactaccaaatcatcaaatgatttgtcttaacattaataacagaattgcattcatttttttcataacattggggttgccagatttatactcag |
34465726 |
T |
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| Q |
119 |
gtgtggcactaagttgtttgaattatttgggagttctagaatggtatattttctctagcttgatccttaaatgatgtattgttggtgatggagagtactt |
218 |
Q |
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| T |
34465725 |
gtgtggcactaagttgtttgaattatttgggagttctagaatggtatattttctctagcttgatccttaaatgatgtattgttggtgatggagaatactt |
34465626 |
T |
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| Q |
219 |
ccttgattttgttgaaatggttgttatgttttgtgttgagttgaacggtagtagt |
273 |
Q |
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| T |
34465625 |
ccttgattttgttgaaatggttgttatgttttgtgttgagttgaacgatagtagt |
34465571 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 27807489 - 27807440
Alignment:
| Q |
170 |
tctctagcttgatccttaaatgatgtattgttggtgatggagagtacttc |
219 |
Q |
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| T |
27807489 |
tctctagcttgatccttaattaatgaactgttggtgatggagagtacttc |
27807440 |
T |
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