View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12737_low_25 (Length: 282)

Name: NF12737_low_25
Description: NF12737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12737_low_25
NF12737_low_25
[»] chr6 (33 HSPs)
chr6 (1-212)||(27703084-27703295)
chr6 (11-164)||(26852469-26852622)
chr6 (214-278)||(27715118-27715182)
chr6 (211-278)||(27682473-27682540)
chr6 (73-201)||(25487010-25487134)
chr6 (73-201)||(26059646-26059783)
chr6 (73-201)||(26079616-26079753)
chr6 (70-160)||(27661814-27661904)
chr6 (118-201)||(25986776-25986857)
chr6 (160-212)||(26852397-26852449)
chr6 (86-156)||(27079154-27079224)
chr6 (211-278)||(27703448-27703521)
chr6 (118-201)||(25514448-25514540)
chr6 (118-201)||(26146608-26146700)
chr6 (98-160)||(31288265-31288325)
chr6 (160-201)||(27079085-27079126)
chr6 (235-271)||(27078825-27078861)
chr6 (235-278)||(25486855-25486898)
chr6 (235-278)||(25548454-25548497)
chr6 (235-278)||(26146453-26146496)
chr6 (161-195)||(31288206-31288240)
chr6 (235-272)||(26059396-26059433)
chr6 (235-272)||(26079366-26079403)
chr6 (241-278)||(26626696-26626733)
chr6 (241-278)||(26650087-26650124)
chr6 (241-278)||(26732673-26732710)
chr6 (241-278)||(26756055-26756092)
chr6 (241-278)||(27600828-27600865)
chr6 (160-201)||(27661928-27661969)
chr6 (241-278)||(28782523-28782560)
chr6 (241-278)||(28789897-28789934)
chr6 (234-278)||(26852122-26852166)
chr6 (234-270)||(26962814-26962850)
[»] chr8 (1 HSPs)
chr8 (211-278)||(29270419-29270486)
[»] scaffold0349 (1 HSPs)
scaffold0349 (214-278)||(16762-16826)
[»] scaffold0419 (1 HSPs)
scaffold0419 (241-278)||(11041-11078)
[»] scaffold0277 (1 HSPs)
scaffold0277 (241-278)||(10265-10302)
[»] chr4 (6 HSPs)
chr4 (241-278)||(18652126-18652163)
chr4 (241-278)||(18676184-18676221)
chr4 (241-278)||(18686224-18686261)
chr4 (241-278)||(18720714-18720751)
chr4 (241-278)||(18728150-18728187)
chr4 (70-102)||(18651932-18651964)


Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 27703084 - 27703295
Alignment:
Q  1 tcaactttataagcatccccaaatgtaaatagaaacaatattttaagattgcacaaacataatccagaaaatcttaaatcatgtatcatcatttgaaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27703084 tcaactttataagcatccccaaatgtaaatagaaacaatattttaagattgcacaaacataatccagaaaatcttaaatcatgtatcatcatttgaataa 27703183  T
Q  101 cttctccaactagaaacaatgaatttttaattgactatatacagaaattaatcaacatttgtaaacagcaaaccacaaacctgcaatgttgagattgaga 200  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||    
T  27703184 cttctccaactagaaacaacgaatttgtaattgactatatacagaaattaatcaacatttgtaaacagaaaatcacaaacctccaatgttgagattgaga 27703283  T
Q  201 gttaactttatg 212  Q
    ||||||||||||    
T  27703284 gttaactttatg 27703295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 11 - 164
Target Start/End: Complemental strand, 26852622 - 26852469
Alignment:
Q  11 aagcatccccaaatgtaaatagaaacaatattttaagattgcacaaacataatccagaaaatcttaaatcatgtatcatcatttgaaaaacttctccaac 110  Q
    |||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||| | ||||||| | ||||||| |||||||||||||||||||||||||    
T  26852622 aagcatcctcaaatgtaaattgaaacaatattttaagagtgcacaaacatcatcaacaaaatctcacatcatgtctcatcatttgaaaaacttctccaac 26852523  T
Q  111 tagaaacaatgaatttttaattgactatatacagaaattaatcaacatttgtaa 164  Q
    ||||||||| ||||||  ||||||||||||||||||||||||||||||||||||    
T  26852522 tagaaacaacgaatttgcaattgactatatacagaaattaatcaacatttgtaa 26852469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 27715118 - 27715182
Alignment:
Q  214 tgttgcaatgaagcattgatatcctcctctgtctctgaaactcccacttccaccaatctctgctt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27715118 tgttgcaatgaagcattgatatcctcctctgtctctgaaactcccacttccaccaatctttgctt 27715182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 211 - 278
Target Start/End: Complemental strand, 27682540 - 27682473
Alignment:
Q  211 tgttgttgcaatgaagcattgatatcctcctctgtctctgaaactcccacttccaccaatctctgctt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  27682540 tgttgttgcaatgaagcattgatatcctcctctgtctctgaaactccaacttccaccaatctttgctt 27682473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 25487134 - 25487010
Alignment:
Q  73 cttaaatcatgtatcatcatttgaaaaacttctccaactagaaacaatgaatttttaattgactatatacagaaattaatcaacatttgtaaacagcaaa 172  Q
    |||| ||||||| ||||  ||| | ||||||||||||||||||||| ||||||| ||| ||||||||||||||||||  ||||||||  || ||| ||||    
T  25487134 cttacatcatgtctcatggtttaagaaacttctccaactagaaacattgaatttgtaactgactatatacagaaatt--tcaacatt--tatacaacaaa 25487039  T
Q  173 ccacaaacctgcaatgttgagattgagag 201  Q
     ||||||||||||||||||||||||||||    
T  25487038 gcacaaacctgcaatgttgagattgagag 25487010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 26059783 - 26059646
Alignment:
Q  73 cttaaatcatgtatcatcatttgaaaaacttctccaactagaaacaatgaatttttaattgactatatacagaaattaatcaacatt---------tgta 163  Q
    |||| ||||||| ||||  ||| | ||||||||||||||||||||| ||||||| ||| |||||| |||||||||||||||||||||         | ||    
T  26059783 cttacatcatgtctcatggtttaagaaacttctccaactagaaacattgaatttgtaactgactacatacagaaattaatcaacatttatacaaagtata 26059684  T
Q  164 aacagcaaaccacaaacctgcaatgttgagattgagag 201  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  26059683 aacatcaaagcacaaacctgcaatgttgagattgagag 26059646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 26079753 - 26079616
Alignment:
Q  73 cttaaatcatgtatcatcatttgaaaaacttctccaactagaaacaatgaatttttaattgactatatacagaaattaatcaacatt---------tgta 163  Q
    |||| ||||||| ||||  ||| | ||||||||||||||||||||| ||||||| ||| |||||| |||||||||||||||||||||         | ||    
T  26079753 cttacatcatgtctcatggtttaagaaacttctccaactagaaacattgaatttgtaactgactacatacagaaattaatcaacatttatacaaagtata 26079654  T
Q  164 aacagcaaaccacaaacctgcaatgttgagattgagag 201  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  26079653 aacatcaaagcacaaacctgcaatgttgagattgagag 26079616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 70 - 160
Target Start/End: Original strand, 27661814 - 27661904
Alignment:
Q  70 aatcttaaatcatgtatcatcatttgaaaaacttctccaactagaaacaatgaatttttaattgactatatacagaaattaatcaacattt 160  Q
    ||||||| ||||||| |||| |||| |  |||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||| ||||    
T  27661814 aatcttacatcatgtctcatgatttaagcaacttctccatctataaacaatgaatttgtaattgactatatacagaaattaatcaatattt 27661904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 201
Target Start/End: Complemental strand, 25986857 - 25986776
Alignment:
Q  118 aatgaatttttaattgactatatacagaaattaatcaacatttgtaaacagcaaaccacaaacctgcaatgttgagattgagag 201  Q
    ||||||||| |||  |||||||||||||||||||||||||||  || ||| |||| ||||||||||||||||||||||||||||    
T  25986857 aatgaatttgtaacggactatatacagaaattaatcaacatt--tatacaacaaagcacaaacctgcaatgttgagattgagag 25986776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 26852449 - 26852397
Alignment:
Q  160 tgtaaacagcaaaccacaaacctgcaatgttgagattgagagttaactttatg 212  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26852449 tgtaaacagcaaaccacaaacctccaatgttgagattgagagttaactttatg 26852397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 86 - 156
Target Start/End: Complemental strand, 27079224 - 27079154
Alignment:
Q  86 tcatcatttgaaaaacttctccaactagaaacaatgaatttttaattgactatatacagaaattaatcaac 156  Q
    ||||||||| |||||||| |||||||||||||||  ||||| ||||||| |||||||||||||||||||||    
T  27079224 tcatcatttaaaaaacttgtccaactagaaacaacaaatttgtaattgaatatatacagaaattaatcaac 27079154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 278
Target Start/End: Original strand, 27703448 - 27703521
Alignment:
Q  211 tgttgttgcaatgaagcattgatatcc------tcctctgtctctgaaactcccacttccaccaatctctgctt 278  Q
    |||||||||||||||||||||||||||      |||||||||||||||||||||| ||||||| |||| |||||    
T  27703448 tgttgttgcaatgaagcattgatatcctcctcttcctctgtctctgaaactcccatttccaccgatctttgctt 27703521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 201
Target Start/End: Complemental strand, 25514540 - 25514448
Alignment:
Q  118 aatgaatttttaattgactatatacagaaattaatcaacatt---------tgtaaacagcaaaccacaaacctgcaatgttgagattgagag 201  Q
    ||||||||| ||| ||||||||||||||||||||||||||||         | || ||| |||| ||||||||||||||||||||||||||||    
T  25514540 aatgaatttgtaactgactatatacagaaattaatcaacatttatacaaagtatatacaacaaagcacaaacctgcaatgttgagattgagag 25514448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 201
Target Start/End: Complemental strand, 26146700 - 26146608
Alignment:
Q  118 aatgaatttttaattgactatatacagaaattaatcaacatt---------tgtaaacagcaaaccacaaacctgcaatgttgagattgagag 201  Q
    ||||||||| ||| ||||||||||||||||||||||||||||         | || ||| |||| ||||||||||||||||||||||||||||    
T  26146700 aatgaatttgtaactgactatatacagaaattaatcaacatttatacaaagtatatacaacaaagcacaaacctgcaatgttgagattgagag 26146608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 31288325 - 31288265
Alignment:
Q  98 aaacttctccaactagaaacaatgaatttttaattgactatatacagaaattaatcaacattt 160  Q
    ||||||||||| ||||||||||||||||  |||||||   |||||||||||||||||||||||    
T  31288325 aaacttctccatctagaaacaatgaattcgtaattga--gtatacagaaattaatcaacattt 31288265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 27079126 - 27079085
Alignment:
Q  160 tgtaaacagcaaaccacaaacctgcaatgttgagattgagag 201  Q
    ||||||||||||| ||||||||| ||||||||||||||||||    
T  27079126 tgtaaacagcaaagcacaaaccttcaatgttgagattgagag 27079085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 27078861 - 27078825
Alignment:
Q  235 tcctcctctgtctctgaaactcccacttccaccaatc 271  Q
    |||||||||||||| ||||||||||||||||||||||    
T  27078861 tcctcctctgtctcggaaactcccacttccaccaatc 27078825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 278
Target Start/End: Complemental strand, 25486898 - 25486855
Alignment:
Q  235 tcctcctctgtctctgaaactcccacttccaccaatctctgctt 278  Q
    |||||| || |||||||||||||||||||||||||||| |||||    
T  25486898 tcctcccctttctctgaaactcccacttccaccaatctttgctt 25486855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 278
Target Start/End: Complemental strand, 25548497 - 25548454
Alignment:
Q  235 tcctcctctgtctctgaaactcccacttccaccaatctctgctt 278  Q
    |||||| || |||||||||||||||||||||||||||| |||||    
T  25548497 tcctcccctttctctgaaactcccacttccaccaatctttgctt 25548454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 278
Target Start/End: Complemental strand, 26146496 - 26146453
Alignment:
Q  235 tcctcctctgtctctgaaactcccacttccaccaatctctgctt 278  Q
    |||||| || |||||||||||||||||||||||||||| |||||    
T  26146496 tcctcccctttctctgaaactcccacttccaccaatctttgctt 26146453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Complemental strand, 31288240 - 31288206
Alignment:
Q  161 gtaaacagcaaaccacaaacctgcaatgttgagat 195  Q
    |||||||||||||||||||||||||| ||||||||    
T  31288240 gtaaacagcaaaccacaaacctgcaaagttgagat 31288206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 272
Target Start/End: Complemental strand, 26059433 - 26059396
Alignment:
Q  235 tcctcctctgtctctgaaactcccacttccaccaatct 272  Q
    |||||| || ||||||||||||||||||||||||||||    
T  26059433 tcctcccctttctctgaaactcccacttccaccaatct 26059396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 272
Target Start/End: Complemental strand, 26079403 - 26079366
Alignment:
Q  235 tcctcctctgtctctgaaactcccacttccaccaatct 272  Q
    |||||| || ||||||||||||||||||||||||||||    
T  26079403 tcctcccctttctctgaaactcccacttccaccaatct 26079366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 278
Target Start/End: Complemental strand, 26626733 - 26626696
Alignment:
Q  241 tctgtctctgaaactcccacttccaccaatctctgctt 278  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  26626733 tctgtctctgaaactcccatttccaccaatctttgctt 26626696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 278
Target Start/End: Complemental strand, 26650124 - 26650087
Alignment:
Q  241 tctgtctctgaaactcccacttccaccaatctctgctt 278  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  26650124 tctgtctttgaaactcccacttccaccaatctttgctt 26650087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 278
Target Start/End: Complemental strand, 26732710 - 26732673
Alignment:
Q  241 tctgtctctgaaactcccacttccaccaatctctgctt 278  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  26732710 tctgtctctgaaactcccatttccaccaatctttgctt 26732673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 278
Target Start/End: Complemental strand, 26756092 - 26756055
Alignment:
Q  241 tctgtctctgaaactcccacttccaccaatctctgctt 278  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  26756092 tctgtctttgaaactcccacttccaccaatctttgctt 26756055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 278
Target Start/End: Original strand, 27600828 - 27600865
Alignment:
Q  241 tctgtctctgaaactcccacttccaccaatctctgctt 278  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  27600828 tctgtctctgaaactcccacttccacaaatctatgctt 27600865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 27661928 - 27661969
Alignment:
Q  160 tgtaaacagcaaaccacaaacctgcaatgttgagattgagag 201  Q
    ||||||||| ||| ||||||||||||| ||||||||||||||    
T  27661928 tgtaaacagtaaagcacaaacctgcaaagttgagattgagag 27661969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 278
Target Start/End: Complemental strand, 28782560 - 28782523
Alignment:
Q  241 tctgtctctgaaactcccacttccaccaatctctgctt 278  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  28782560 tctgtctctgaaactaccacttccaccaatctttgctt 28782523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 278
Target Start/End: Complemental strand, 28789934 - 28789897
Alignment:
Q  241 tctgtctctgaaactcccacttccaccaatctctgctt 278  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  28789934 tctgtctctgaaactaccacttccaccaatctttgctt 28789897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 26852166 - 26852122
Alignment:
Q  234 atcctcctctgtctctgaaactcccacttccaccaatctctgctt 278  Q
    |||||||||||||||||||||||  ||||||| |||||| |||||    
T  26852166 atcctcctctgtctctgaaactctaacttccatcaatctttgctt 26852122  T

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Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 26962850 - 26962814
Alignment:
Q  234 atcctcctctgtctctgaaactcccacttccaccaat 270  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  26962850 atcctcctctgtttctgaaactcccaattccaccaat 26962814  T

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Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 211 - 278
Target Start/End: Original strand, 29270419 - 29270486
Alignment:
Q  211 tgttgttgcaatgaagcattgatatcctcctctgtctctgaaactcccacttccaccaatctctgctt 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29270419 tgttgttgcaatgaagcattgatatcctcctctgtctctgaaactcccacttccaccaatctttgctt 29270486  T

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Target: scaffold0349 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 16826 - 16762
Alignment:
Q  214 tgttgcaatgaagcattgatatcctcctctgtctctgaaactcccacttccaccaatctctgctt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16826 tgttgcaatgaagcattgatatcctcctctgtctctgaaactcccacttccaccaatctttgctt 16762  T

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Target: scaffold0419 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 278
Target Start/End: Complemental strand, 11078 - 11041
Alignment:
Q  241 tctgtctctgaaactcccacttccaccaatctctgctt 278  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  11078 tctgtctctgaaactaccacttccaccaatctttgctt 11041  T

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Target: scaffold0277 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 278
Target Start/End: Original strand, 10265 - 10302
Alignment:
Q  241 tctgtctctgaaactcccacttccaccaatctctgctt 278  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  10265 tctgtctctgaaactaccacttccaccaatctttgctt 10302  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 278
Target Start/End: Original strand, 18652126 - 18652163
Alignment:
Q  241 tctgtctctgaaactcccacttccaccaatctctgctt 278  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  18652126 tctgtctctgaaactcccacttccacaaatctatgctt 18652163  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 278
Target Start/End: Original strand, 18676184 - 18676221
Alignment:
Q  241 tctgtctctgaaactcccacttccaccaatctctgctt 278  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  18676184 tctgtctctgaaactcccacttccacaaatctatgctt 18676221  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 278
Target Start/End: Original strand, 18686224 - 18686261
Alignment:
Q  241 tctgtctctgaaactcccacttccaccaatctctgctt 278  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  18686224 tctgtctctgaaactcccacttccacaaatctatgctt 18686261  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 278
Target Start/End: Original strand, 18720714 - 18720751
Alignment:
Q  241 tctgtctctgaaactcccacttccaccaatctctgctt 278  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  18720714 tctgtctctgaaactcccacttccacaaatctatgctt 18720751  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 278
Target Start/End: Original strand, 18728150 - 18728187
Alignment:
Q  241 tctgtctctgaaactcccacttccaccaatctctgctt 278  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  18728150 tctgtctctgaaactcccacttccacaaatctatgctt 18728187  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 18651932 - 18651964
Alignment:
Q  70 aatcttaaatcatgtatcatcatttgaaaaact 102  Q
    ||||||||||||||| |||||||||||||||||    
T  18651932 aatcttaaatcatgtctcatcatttgaaaaact 18651964  T

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