View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12737_low_26 (Length: 279)

Name: NF12737_low_26
Description: NF12737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12737_low_26
NF12737_low_26
[»] chr1 (8 HSPs)
chr1 (5-264)||(35162929-35163190)
chr1 (5-259)||(30403109-30403365)
chr1 (5-259)||(30409666-30409922)
chr1 (30-259)||(29394291-29394520)
chr1 (5-136)||(29393903-29394036)
chr1 (26-136)||(30402771-30402881)
chr1 (26-136)||(30409328-30409438)
chr1 (26-136)||(35163418-35163528)
[»] chr8 (6 HSPs)
chr8 (5-259)||(11143689-11143945)
chr8 (5-259)||(1604071-1604327)
chr8 (26-136)||(11144173-11144283)
chr8 (26-136)||(1661482-1661592)
chr8 (190-259)||(1661604-1661673)
chr8 (5-103)||(44551873-44551972)
[»] chr3 (2 HSPs)
chr3 (5-259)||(55040338-55040594)
chr3 (26-136)||(55040000-55040110)
[»] chr5 (2 HSPs)
chr5 (5-259)||(9260837-9261093)
chr5 (26-136)||(9260497-9260607)
[»] chr7 (3 HSPs)
chr7 (77-259)||(13947644-13947826)
chr7 (26-136)||(13948053-13948163)
chr7 (29-117)||(1972595-1972683)
[»] chr4 (2 HSPs)
chr4 (144-260)||(46623684-46623800)
chr4 (29-117)||(36892665-36892753)
[»] chr6 (3 HSPs)
chr6 (150-259)||(2311861-2311970)
chr6 (5-96)||(32445856-32445949)
chr6 (5-103)||(14986903-14987002)
[»] chr2 (1 HSPs)
chr2 (29-117)||(26450122-26450210)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 5 - 264
Target Start/End: Complemental strand, 35163190 - 35162929
Alignment:
Q  5 gcagccaacaaagaggcactgca--gcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 102  Q
    |||||||||||||| ||||| ||  ||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35163190 gcagccaacaaagatgcactacacagcctgctgcccctcaagaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 35163091  T
Q  103 tctcaaaagacaatctttatcactttatgtaaagnnnnnnnatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 202  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35163090 tctcaaaagacaatctttatcactttatgtaaagtttttttatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 35162991  T
Q  203 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatgatgtc 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35162990 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatgatgtc 35162929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 5 - 259
Target Start/End: Original strand, 30403109 - 30403365
Alignment:
Q  5 gcagccaacaaagaggcactgca--gcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 102  Q
    |||||||||||||| ||||| ||  ||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30403109 gcagccaacaaagatgcactacacagcctgctgcccctcaagaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 30403208  T
Q  103 tctcaaaagacaatctttatcactttatgtaaagnnnnnnnatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 202  Q
    |||||||||||||||||||||| |||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30403209 tctcaaaagacaatctttatcaatttatgtaaagtttatttatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 30403308  T
Q  203 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30403309 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 30403365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 5 - 259
Target Start/End: Original strand, 30409666 - 30409922
Alignment:
Q  5 gcagccaacaaagaggcactgca--gcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 102  Q
    |||||||||||||| ||||| ||  ||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30409666 gcagccaacaaagatgcactacacagcctgctgcccctcaagaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 30409765  T
Q  103 tctcaaaagacaatctttatcactttatgtaaagnnnnnnnatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 202  Q
    |||||||||||||||||||||| |||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30409766 tctcaaaagacaatctttatcaatttatgtaaagtttatttatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 30409865  T
Q  203 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30409866 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 30409922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 30 - 259
Target Start/End: Original strand, 29394291 - 29394520
Alignment:
Q  30 ctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcacttta 129  Q
    ||||||||| || |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29394291 ctgctgcccctcaagaacacaccacgaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcaattta 29394390  T
Q  130 tgtaaagnnnnnnnatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaatggaactatatttcatattagttattca 229  Q
    |||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29394391 tgtaaagtttatttatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaatggaactatatttcatattagttattca 29394490  T
Q  230 cacccattatcgtgatgatagtggctcatg 259  Q
    ||||||||||||||||||||||||||||||    
T  29394491 cacccattatcgtgatgatagtggctcatg 29394520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 29393903 - 29394036
Alignment:
Q  5 gcagccaacaaagaggcactgcag--cctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 102  Q
    |||||||||| ||||||||| ||   |||||||  | |||||| || | ||||||||||| ||||||||||||||||||  |||||||||||||||||||    
T  29393903 gcagccaacacagaggcactacacatcctgctgttcctcgagagcacatcacaaaaaacataaaccacctcgacaaagtccaccaaaactatcactattt 29394002  T
Q  103 tctcaaaagacaatctttatcactttatgtaaag 136  Q
    ||||||| |||||||||||||| |||||||||||    
T  29394003 tctcaaaggacaatctttatcaatttatgtaaag 29394036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 30402771 - 30402881
Alignment:
Q  26 cagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcac 125  Q
    |||||||||| ||||||||| || ||||||||||||| |||||||||||||| |||  |||||||||||||||||||||||||| |||| ||||| |||     
T  30402771 cagcctgctgtccttcgagagcacaccacaaaaaacataaaccacctcgacagagtccaccaaaactatcactattttctcaaaggacagtctttttcaa 30402870  T
Q  126 tttatgtaaag 136  Q
    |||||||||||    
T  30402871 tttatgtaaag 30402881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 30409328 - 30409438
Alignment:
Q  26 cagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcac 125  Q
    |||||||||| ||||||||| || ||||||||||||| |||||||||||||| |||  |||||||||||||||||||||||||| |||| ||||| |||     
T  30409328 cagcctgctgtccttcgagagcacaccacaaaaaacataaaccacctcgacagagtccaccaaaactatcactattttctcaaaggacagtctttttcaa 30409427  T
Q  126 tttatgtaaag 136  Q
    |||||||||||    
T  30409428 tttatgtaaag 30409438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 35163528 - 35163418
Alignment:
Q  26 cagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcac 125  Q
    ||||||| || || |||||| || ||||||||||||| ||||||| ||||||||||  |||||||||||||||||||||||||| ||||||||||||||     
T  35163528 cagcctgttgtccctcgagagcacaccacaaaaaacataaaccacttcgacaaagtccaccaaaactatcactattttctcaaaggacaatctttatcaa 35163429  T
Q  126 tttatgtaaag 136  Q
    |||||||||||    
T  35163428 tttatgtaaag 35163418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 5 - 259
Target Start/End: Complemental strand, 11143945 - 11143689
Alignment:
Q  5 gcagccaacaaagaggcactgca--gcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 102  Q
    |||||||||||||| ||||| ||  ||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11143945 gcagccaacaaagatgcactacacagcctgctgcccctcaagaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 11143846  T
Q  103 tctcaaaagacaatctttatcactttatgtaaagnnnnnnnatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 202  Q
    |||||||||||||||||||||| |||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11143845 tctcaaaagacaatctttatcaatttatgtaaagtttatttatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 11143746  T
Q  203 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11143745 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 11143689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 5 - 259
Target Start/End: Original strand, 1604071 - 1604327
Alignment:
Q  5 gcagccaacaaagaggcactgcag--cctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 102  Q
    |||||||||||||||||||| ||   |||||||||| ||||||||| ||||||||||||||||||||| ||||||||||  |||||||||||||||||||    
T  1604071 gcagccaacaaagaggcactacacatcctgctgcccctcgagaacacaccacaaaaaacagaaaccacatcgacaaagtccaccaaaactatcactattt 1604170  T
Q  103 tctcaaaagacaatctttatcactttatgtaaagnnnnnnnatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 202  Q
    |||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1604171 tctcaaaagacaatctttatcaatttatgtaaagtttatttatttgcacactattttatcataacattgacaatacttgttgtgaaaatttacatctaat 1604270  T
Q  203 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1604271 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 1604327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 11144283 - 11144173
Alignment:
Q  26 cagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcac 125  Q
    |||||||||| ||||||||| || ||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||| |||| |||||||||     
T  11144283 cagcctgctgtccttcgagagcacaccacaaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacagtctttatcaa 11144184  T
Q  126 tttatgtaaag 136  Q
    |||||||||||    
T  11144183 tttatgtaaag 11144173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 1661482 - 1661592
Alignment:
Q  26 cagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcac 125  Q
    |||||||||| || |||||| || |||| |||||||| ||||||||||||| ||||  |||||||||||||||||||||||||| ||||||||||||||     
T  1661482 cagcctgctgtccctcgagagcacaccataaaaaacataaaccacctcgacgaagtccaccaaaactatcactattttctcaaaggacaatctttatcaa 1661581  T
Q  126 tttatgtaaag 136  Q
    |||||||||||    
T  1661582 tttatgtaaag 1661592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 1661604 - 1661673
Alignment:
Q  190 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 259  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1661604 atttacatctaatgaaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 1661673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 44551972 - 44551873
Alignment:
Q  5 gcagccaacaaagaggcactgca--gcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 102  Q
    |||||||||| ||||||||| ||  ||||||||||| ||||||  | |||||||||||||||||| |||||||||||||  |||||||||||||||||||    
T  44551972 gcagccaacacagaggcactacacagcctgctgcccctcgagagaacaccacaaaaaacagaaac-acctcgacaaagtccaccaaaactatcactattt 44551874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 5 - 259
Target Start/End: Original strand, 55040338 - 55040594
Alignment:
Q  5 gcagccaacaaagaggcactgca--gcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 102  Q
    |||||||||||||| ||||| ||  ||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  55040338 gcagccaacaaagatgcactacacagcctgctgcccctcaagaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaaatatcactattt 55040437  T
Q  103 tctcaaaagacaatctttatcactttatgtaaagnnnnnnnatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 202  Q
    ||||||||||||||||| |||| |||||||||||       |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  55040438 tctcaaaagacaatcttcatcaatttatgtaaagtttatttatttgcacactattttatcataacattgacaatacttgttatgcaaatttacatctaat 55040537  T
Q  203 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 259  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55040538 gaaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 55040594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 55040000 - 55040110
Alignment:
Q  26 cagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcac 125  Q
    |||||||||| || |||||| || ||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||| || |||||||||||     
T  55040000 cagcctgctgtccctcgagagcacaccacaaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggataatctttatcaa 55040099  T
Q  126 tttatgtaaag 136  Q
    |||||||||||    
T  55040100 tttatgtaaag 55040110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 5 - 259
Target Start/End: Original strand, 9260837 - 9261093
Alignment:
Q  5 gcagccaacaaagaggcactgca--gcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 102  Q
    |||||||||| ||||||||| ||  ||||||||||| |||||| || |||||||||||||||||||||||||||||| |  |||||||||||||||||||    
T  9260837 gcagccaacacagaggcactacacagcctgctgcccctcgagagcacaccacaaaaaacagaaaccacctcgacaaaatccaccaaaactatcactattt 9260936  T
Q  103 tctcaaaagacaatctttatcactttatgtaaagnnnnnnnatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 202  Q
    |||||| ||||||||| ||||| |||||||||||       |||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||||    
T  9260937 tctcaacagacaatctctatcaatttatgtaaagtttatttatttgcacactattttatcataacatagacaatacctattgtgcaaatttagatctaat 9261036  T
Q  203 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 259  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  9261037 ggaactatatttcatattagttattcactcccattatcgtgatgattgtggctcatg 9261093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 9260497 - 9260607
Alignment:
Q  26 cagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcac 125  Q
    |||||||||| || |||||| || || |||||||||| ||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||     
T  9260497 cagcctgctgtccctcgagagcacactacaaaaaacaaaaaccacctcgacaaagtccaccaaaactatcgctattttctcaaaagacaatctttatcaa 9260596  T
Q  126 tttatgtaaag 136  Q
    ||||| |||||    
T  9260597 tttatataaag 9260607  T

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Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 77 - 259
Target Start/End: Complemental strand, 13947826 - 13947644
Alignment:
Q  77 aaagtataccaaaactatcactattttctcaaaagacaatctttatcactttatgtaaagnnnnnnnatttgcacactattttatcataacattgacaat 176  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||       |||||||||||||||||||||||||||||||||    
T  13947826 aaagtataccaaaactatcattattttctcaaaagacaatctttatcaatttatgtaaagtttatttatttgcacactattttatcataacattgacaat 13947727  T
Q  177 acttgttgtgcaaatttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13947726 acttgttgtgcaaatttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 13947644  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 13948163 - 13948053
Alignment:
Q  26 cagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcac 125  Q
    |||||||||| || ||||||||| ||||||||||||| ||||||||||||||||||   ||||||||||||||||||||||||| ||||||||||||||     
T  13948163 cagcctgctgtccctcgagaacacaccacaaaaaacataaaccacctcgacaaagtcccccaaaactatcactattttctcaaaggacaatctttatcaa 13948064  T
Q  126 tttatgtaaag 136  Q
    |||||||||||    
T  13948063 tttatgtaaag 13948053  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 1972683 - 1972595
Alignment:
Q  29 cctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatc 117  Q
    |||||||||| |||||  || ||| ||||  ||||||||||| |||| |||||  |||||||||| |||||||||||||| ||||||||    
T  1972683 cctgctgcccctcgagggcacaccgcaaaggacagaaaccacttcgaaaaagtccaccaaaactaccactattttctcaacagacaatc 1972595  T

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Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 144 - 260
Target Start/End: Original strand, 46623684 - 46623800
Alignment:
Q  144 atttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaatggaactatatttcatattagttattcacacccattatcgtg 243  Q
    |||| ||||||||||||||||||||  ||||||||||||||||||||||||  |||||||||||||||||||||| |||||| ||||||||||||| |||    
T  46623684 atttacacactattttatcataacaaagacaatacttgttgtgcaaatttaggtctaatggaactatatttcataatagttaatcacacccattatggtg 46623783  T
Q  244 atgatagtggctcatga 260  Q
    |||||||||||||||||    
T  46623784 atgatagtggctcatga 46623800  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 36892753 - 36892665
Alignment:
Q  29 cctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatc 117  Q
    |||||||||| |||||  || ||| ||||| ||||||||||| ||||||||||  ||||||||||||||||||||||||| ||||||||    
T  36892753 cctgctgcccctcgagggcacaccgcaaaagacagaaaccacttcgacaaagtccaccaaaactatcactattttctcaacagacaatc 36892665  T

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Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 150 - 259
Target Start/End: Original strand, 2311861 - 2311970
Alignment:
Q  150 acactattttatcataacattgacaatacttgttgtgcaaatttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgata 249  Q
    |||||||||||||||||||| |||||||| | ||||||||||||| ||||||||||||||||||| ||||||| ||||||| |||||||||||||||||     
T  2311861 acactattttatcataacatagacaatacctattgtgcaaatttagatctaatggaactatatttgatattaggtattcactcccattatcgtgatgatt 2311960  T
Q  250 gtggctcatg 259  Q
    ||||||||||    
T  2311961 gtggctcatg 2311970  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 32445949 - 32445856
Alignment:
Q  5 gcagccaacaaagaggcactgca--gcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatca 96  Q
    ||||| |||||||||||||| ||  ||||||||||| |||||| || ||||||||||||||||||||||||||||||||  |||||||||||||    
T  32445949 gcagctaacaaagaggcactacacagcctgctgcccctcgagagcacaccacaaaaaacagaaaccacctcgacaaagtccaccaaaactatca 32445856  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 14986903 - 14987002
Alignment:
Q  5 gcagccaacaaagaggcactgca--gcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 102  Q
    |||||||||| ||||||||| ||  |||| |||||| ||||||  | |  ||||||||||||||| |||||||||||||  |||||||||||||||||||    
T  14986903 gcagccaacacagaggcactacacagcctactgcccctcgagataacatgacaaaaaacagaaac-acctcgacaaagtccaccaaaactatcactattt 14987001  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 26450210 - 26450122
Alignment:
Q  29 cctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatc 117  Q
    |||||||||| |||||  || ||| ||||| ||||||||||| ||||||||||  |||||||||| |||||||||||||| ||||||||    
T  26450210 cctgctgcccctcgagggcacaccgcaaaagacagaaaccacttcgacaaagtccaccaaaactaccactattttctcaacagacaatc 26450122  T

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