View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12737_low_3 (Length: 646)
Name: NF12737_low_3
Description: NF12737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12737_low_3 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 568; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 18 - 646
Target Start/End: Complemental strand, 4287085 - 4286461
Alignment:
| Q |
18 |
taatgatcaaatctatcactctgacctggatgacataaattggtttgaactttgaatattagttagtgttgtttggatatgtttgctctaatgtttgtaa |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
4287085 |
taatgatcaaatctatcactctgaactggatgacataaattggtttgaacttcgaatattagttagtgtttcttggatatgtttgctctaaagtttgtaa |
4286986 |
T |
|
| Q |
118 |
ctgaagcttcttaaaatatatatactttcttcatgctttcatcaatcatgttttaagaaaatgtgtttactagttctaatattgatagcgtgctttcatt |
217 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4286985 |
ttgaagcttcttataatatatatactttcttcatgctttcatcaatcatgttttaagaaaatgtgtttactagttctaatattgatagcgtgctttcatt |
4286886 |
T |
|
| Q |
218 |
cctaagcataaaaagaaacattgattatcttgactaaataaaacaatctaatcttgaatgaaaacctgtgtgttattattgtttcctcctctcaaaattc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4286885 |
cctaagcataaaaagaaacattgattatcttgactaaataaaacaatctaatcttgaatgaaaacctgtgtgttattattgtttcctcctctcaaaattc |
4286786 |
T |
|
| Q |
318 |
tgttcatacattactggggagtagttaccaagtgctagtttattgcatgtagtcaaatttatgattttttgatgtttcgaattgacgtagaattcagttt |
417 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
4286785 |
tgttcatacattactggggagtagttgccaagtgctagtttattgcatgtagtcaaatttatgatttttttatgtttcaaattgacgtagaattcagttt |
4286686 |
T |
|
| Q |
418 |
gtttggatcaactccttctcaagtgctttggggtggactgatgaattaattgtatgtcatgatcaaacaggtggtcataaataaatgttgctgtttatta |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4286685 |
gtttggatcaactccttctcaagtgctttggggtggactgatg----aattgtatgtcatgatcaaacaggtggtcataaataaatgttgctgtttatta |
4286590 |
T |
|
| Q |
518 |
aaccagttttatgttttgagaccttttatatagcaatgcatgaacattgttcttgtgacacaccaagtaggcaagtagatttcttagataatatcagtct |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4286589 |
aaccagttttatgttttgagaccttttatatagcaatgcatgaacattgttcttgtgacacaccaagtaggcaagtagatttcttagataatatcagtct |
4286490 |
T |
|
| Q |
618 |
tatgtccttggttcaatcttcaatataat |
646 |
Q |
| |
|
|||||| |||||||||||||||||||||| |
|
|
| T |
4286489 |
tatgtctttggttcaatcttcaatataat |
4286461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 19972224 - 19972170
Alignment:
| Q |
185 |
tactagttctaatattgatagcgtgctttcattcctaagcataaaaagaaacatt |
239 |
Q |
| |
|
|||||| ||||||||||||||| | |||||||| ||||||||||||||||||| |
|
|
| T |
19972224 |
tactagctctaatattgatagcatcacttcattcccaagcataaaaagaaacatt |
19972170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 19972306 - 19972245
Alignment:
| Q |
138 |
tatactttcttcatgctttcatcaatcatgttttaagaaaatgtgtttactagttctaatat |
199 |
Q |
| |
|
|||| |||||||||||||| ||||| |||||||| |||||| | |||||||| |||||||| |
|
|
| T |
19972306 |
tataatttcttcatgctttgatcaaccatgttttgagaaaacgcatttactagctctaatat |
19972245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 554 - 618
Target Start/End: Complemental strand, 17165498 - 17165434
Alignment:
| Q |
554 |
tgcatgaacattgttcttgtgacacaccaagtaggcaagtagatttcttagataatatcagtctt |
618 |
Q |
| |
|
|||||||||||||||||||| |||||| || ||| ||||||||||| | |||||| ||| |||| |
|
|
| T |
17165498 |
tgcatgaacattgttcttgtaacacactaattagttaagtagatttccttgataatgtcaatctt |
17165434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University