View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12737_low_30 (Length: 258)

Name: NF12737_low_30
Description: NF12737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12737_low_30
NF12737_low_30
[»] chr1 (2 HSPs)
chr1 (20-245)||(49167015-49167236)
chr1 (57-126)||(4868439-4868507)
[»] chr4 (4 HSPs)
chr4 (60-171)||(2996567-2996678)
chr4 (55-127)||(6987701-6987773)
chr4 (57-108)||(15620358-15620408)
chr4 (60-108)||(1408285-1408333)
[»] chr8 (2 HSPs)
chr8 (179-211)||(31315537-31315569)
chr8 (182-229)||(40356806-40356854)
[»] chr2 (2 HSPs)
chr2 (57-105)||(1318296-1318344)
chr2 (56-100)||(27699490-27699534)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 245
Target Start/End: Complemental strand, 49167236 - 49167015
Alignment:
Q  20 ccaatattagtatcggtctcagtgcttcatagctagtttgtgagactgattgagagagtttatgaagacatcttataacatgtccataatctttttacaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49167236 ccaatattagtatcggtctcagtgcttcatagctagtttgtgagactgattgagagagtttatgaagacatcttataacatgtccataatctttttacaa 49167137  T
Q  120 cttatttcgccaagttcttcaagacatcttatggaaacaacttatgacttatnnnnnnntagtttgactttattttttcttttattat-aaaatagctaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||||       ||||||||||||||||||||||||||||| |||||||||||    
T  49167136 cttatttcgccaagttcttcaagacatcttatggaaacaacatataacttat-----aatagtttgactttattttttcttttattataaaaatagctaa 49167042  T
Q  219 cagataagcacatgttagatgtcagtg 245  Q
    |||||||||||||||||||||||||||    
T  49167041 cagataagcacatgttagatgtcagtg 49167015  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 4868507 - 4868439
Alignment:
Q  57 ttgtgagactgattgagagagtttatgaagacatcttataacatgtccataatctttttacaacttattt 126  Q
    ||||||||||| ||||||||||||||||| ||| ||||| ||||||| ||||  | ||| ||||||||||    
T  4868507 ttgtgagactgtttgagagagtttatgaa-acaacttatgacatgtcaataagttgttttcaacttattt 4868439  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 60 - 171
Target Start/End: Complemental strand, 2996678 - 2996567
Alignment:
Q  60 tgagactgattgagagagtttatgaagacatcttataacatgtccataatctttttacaacttatttcgccaagttcttcaagacatcttatggaaacaa 159  Q
    |||||||| ||||||||| ||||||| ||| ||||| |||||||||||| |||||| ||||||||||    | | ||| ||||| | |||||| ||||||    
T  2996678 tgagactgtttgagagagcttatgaaaacaacttatgacatgtccataagcttttttcaacttattttcatacgctctccaagatagcttatgaaaacaa 2996579  T
Q  160 cttatgacttat 171  Q
    ||||| ||||||    
T  2996578 cttataacttat 2996567  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 127
Target Start/End: Original strand, 6987701 - 6987773
Alignment:
Q  55 gtttgtgagactgattgagagagtttatgaagacatcttataacatgtccataatctttttacaacttatttc 127  Q
    ||||||||||||| ||| ||||| ||||| | ||| ||||| |||||||||||| || ||| |||||||||||    
T  6987701 gtttgtgagactgtttgggagagcttatggatacaacttatgacatgtccataaactattttcaacttatttc 6987773  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 15620358 - 15620408
Alignment:
Q  57 ttgtgagactgattgagagagtttatgaagacatcttataacatgtccataa 108  Q
    |||||||| ||||||||||||||||| || ||| ||||||||||||||||||    
T  15620358 ttgtgagattgattgagagagtttat-aaaacaacttataacatgtccataa 15620408  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 1408285 - 1408333
Alignment:
Q  60 tgagactgattgagagagtttatgaagacatcttataacatgtccataa 108  Q
    |||||||| |||||||| |||||||| ||| ||||| ||||||||||||    
T  1408285 tgagactgtttgagagaatttatgaaaacagcttattacatgtccataa 1408333  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 31315537 - 31315569
Alignment:
Q  179 tagtttgactttattttttcttttattataaaa 211  Q
    ||||||||||||||||| |||||||||||||||    
T  31315537 tagtttgactttattttatcttttattataaaa 31315569  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 40356854 - 40356806
Alignment:
Q  182 tttgactttattttttcttttattata-aaatagctaacagataagcac 229  Q
    |||||||||||||| |||||||||||| |||||||| | ||||||||||    
T  40356854 tttgactttattttatcttttattatataaatagcttatagataagcac 40356806  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 1318344 - 1318296
Alignment:
Q  57 ttgtgagactgattgagagagtttatgaagacatcttataacatgtcca 105  Q
    ||||||||||| ||| ||||| ||||||| ||||||||| |||||||||    
T  1318344 ttgtgagactgtttgtgagagcttatgaaaacatcttatgacatgtcca 1318296  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 27699490 - 27699534
Alignment:
Q  56 tttgtgagactgattgagagagtttatgaagacatcttataacat 100  Q
    |||||||||||| ||||||||||||||||| ||| ||||| ||||    
T  27699490 tttgtgagactgtttgagagagtttatgaaaacaacttatgacat 27699534  T

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