View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12737_low_31 (Length: 257)
Name: NF12737_low_31
Description: NF12737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12737_low_31 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 13410094 - 13410331
Alignment:
| Q |
20 |
atagctaggtgaggcctcatagtaattacaaaatacataacagcaccaacaacctataggtgaggcctgaagtgaatagattcatattagtctccaatta |
119 |
Q |
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| T |
13410094 |
atagctaggtgaggcctcatagtaattaaaaaatacataacagcaccaacaacatataggtgaggcctgaagtgaatatattcataatagtctcc-atta |
13410192 |
T |
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| Q |
120 |
ttagcaatgcagtaacaataattatt-nnnnnnntgcaataagtaatgctatattgagtaactcattaaaacagaagataaacaaaataccttttacagg |
218 |
Q |
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| T |
13410193 |
ttagcaatgcagtaacaataattattaaaaaaaatgcaataagtaatgctatattgagtaactcattaaaacagaagataaacaaaatacctttaacaga |
13410292 |
T |
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| Q |
219 |
ttgttggaagtacatgtacaattttctagtcaaaatgaa |
257 |
Q |
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| T |
13410293 |
ttgttggaagtacatgtacaattttctggtcaaaatgaa |
13410331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 107 - 257
Target Start/End: Complemental strand, 3276751 - 3276603
Alignment:
| Q |
107 |
tagtctccaattattagcaatgcagtaacaataattattnnnnnnntgcaataagtaatgctatattgagtaactcattaaaacagaagataaacaaaat |
206 |
Q |
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| T |
3276751 |
tagtctcca-ttattagcaatgcagtaacaataattattaaatacatgcaataagtaatgcta-attgagtaactcattgaaacagaagataaacaaaat |
3276654 |
T |
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| Q |
207 |
accttttacaggttgttggaagtacatgtacaattttctagtcaaaatgaa |
257 |
Q |
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| T |
3276653 |
acctttaacaggttgttggaggtgcatgtacaattttcgggtcaaaatgaa |
3276603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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