View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12737_low_40 (Length: 241)

Name: NF12737_low_40
Description: NF12737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12737_low_40
NF12737_low_40
[»] chr8 (8 HSPs)
chr8 (17-225)||(30172639-30172847)
chr8 (132-162)||(5290566-5290596)
chr8 (132-170)||(12972773-12972811)
chr8 (121-175)||(40356783-40356837)
chr8 (126-163)||(6918955-6918992)
chr8 (126-175)||(26717169-26717218)
chr8 (131-175)||(4510940-4510984)
chr8 (134-170)||(6966825-6966861)
[»] chr1 (6 HSPs)
chr1 (136-176)||(4180714-4180754)
chr1 (132-178)||(46712282-46712328)
chr1 (121-171)||(870961-871011)
chr1 (139-172)||(41638432-41638465)
chr1 (135-163)||(42550165-42550193)
chr1 (132-164)||(50764489-50764521)
[»] chr7 (4 HSPs)
chr7 (116-163)||(45078217-45078264)
chr7 (135-178)||(5369807-5369850)
chr7 (121-176)||(39362040-39362095)
chr7 (131-176)||(29574715-29574760)
[»] chr6 (3 HSPs)
chr6 (126-175)||(2732338-2732387)
chr6 (132-170)||(31668800-31668838)
chr6 (131-163)||(3217304-3217336)
[»] chr5 (9 HSPs)
chr5 (135-175)||(34198347-34198387)
chr5 (117-164)||(29365542-29365589)
chr5 (132-170)||(26516215-26516253)
chr5 (121-166)||(6738511-6738556)
chr5 (132-161)||(7096242-7096271)
chr5 (121-166)||(10391274-10391319)
chr5 (131-171)||(1191489-1191529)
chr5 (132-164)||(20982250-20982282)
chr5 (131-170)||(28776891-28776931)
[»] chr4 (5 HSPs)
chr4 (116-175)||(23819002-23819061)
chr4 (131-174)||(28582023-28582066)
chr4 (140-175)||(30207693-30207728)
chr4 (133-170)||(54414866-54414903)
chr4 (131-163)||(43932357-43932389)
[»] chr3 (6 HSPs)
chr3 (131-170)||(28842971-28843010)
chr3 (126-168)||(16790465-16790507)
chr3 (120-166)||(49772771-49772817)
chr3 (132-165)||(33307695-33307728)
chr3 (140-176)||(5407580-5407616)
chr3 (132-164)||(41028966-41028998)
[»] chr2 (4 HSPs)
chr2 (132-179)||(17952816-17952863)
chr2 (121-175)||(10150667-10150721)
chr2 (121-170)||(44606192-44606241)
chr2 (140-172)||(37053509-37053541)
[»] scaffold0654 (1 HSPs)
scaffold0654 (132-170)||(6752-6790)
[»] scaffold0014 (1 HSPs)
scaffold0014 (132-170)||(116671-116709)


Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 30172639 - 30172847
Alignment:
Q  17 acattaactctgctccaacccacgccgaagaagcttctgttgataatcgtattccagctacaatcattaccggttttctcggctctggaaaggtgctact 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30172639 acattaactctgctccaacccacgccgaagaagcttctgttgataatcgtattccagctacaatcattaccggttttctcggctctggaaaggtgctact 30172738  T
Q  117 ttatttttattatgaaaatagcttatacataagcacttgtatgataagtgcttaattaaatttagtttataatcgagttttctgtactgcagaccactct 216  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30172739 ttatttttattatcaaaatagcttatacataagcacttgtatgataagtgcttaattaaatttagtttataatcgagttttctgtactgcagaccactct 30172838  T
Q  217 tctgaatca 225  Q
    |||||||||    
T  30172839 tctgaatca 30172847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 162
Target Start/End: Complemental strand, 5290596 - 5290566
Alignment:
Q  132 aaatagcttatacataagcacttgtatgata 162  Q
    |||||||||||||||||||||||||||||||    
T  5290596 aaatagcttatacataagcacttgtatgata 5290566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 12972811 - 12972773
Alignment:
Q  132 aaatagcttatacataagcacttgtatgataagtgctta 170  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  12972811 aaatagcttatacataagcacttatatgataaatgctta 12972773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 175
Target Start/End: Complemental strand, 40356837 - 40356783
Alignment:
Q  121 ttttattatgaaaatagcttatacataagcacttgtatgataagtgcttaattaa 175  Q
    |||||||||  |||||||||||| |||||||||| ||||| ||||| ||||||||    
T  40356837 ttttattatataaatagcttatagataagcacttatatgacaagtgtttaattaa 40356783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 6918992 - 6918955
Alignment:
Q  126 ttatgaaaatagcttatacataagcacttgtatgataa 163  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  6918992 ttataaaaatagcttatacataagcacttatatgataa 6918955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 26717218 - 26717169
Alignment:
Q  126 ttatgaaaatagcttatacataagcacttgtatgataagtgcttaattaa 175  Q
    |||| ||| |||||||| || |||||||| ||||||||||||||||||||    
T  26717218 ttataaaattagcttattcagaagcacttatatgataagtgcttaattaa 26717169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 175
Target Start/End: Complemental strand, 4510984 - 4510940
Alignment:
Q  131 aaaatagcttatacataagcacttgtatgataagtgcttaattaa 175  Q
    ||||||||||||| ||||||| ||| |||||||| ||||||||||    
T  4510984 aaaatagcttataaataagcaattgcatgataagcgcttaattaa 4510940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 6966861 - 6966825
Alignment:
Q  134 atagcttatacataagcacttgtatgataagtgctta 170  Q
    |||||||||||||||||| || |||||||||||||||    
T  6966861 atagcttatacataagcatttatatgataagtgctta 6966825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 4180714 - 4180754
Alignment:
Q  136 agcttatacataagcacttgtatgataagtgcttaattaaa 176  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  4180714 agcttatacataagcacttatatgataagtgcttaattaaa 4180754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 46712328 - 46712282
Alignment:
Q  132 aaatagcttatacataagcacttgtatgataagtgcttaattaaatt 178  Q
    ||||||||||||| ||||||||||| ||||||||| |||||||||||    
T  46712328 aaatagcttatacctaagcacttgtgtgataagtgtttaattaaatt 46712282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 871011 - 870961
Alignment:
Q  121 ttttattatgaaaatagcttatacataagcacttgtatgataagtgcttaa 171  Q
    |||| |||| ||||||| |||||||||||||||| ||||||||| ||||||    
T  871011 ttttgttataaaaatagtttatacataagcacttatatgataagcgcttaa 870961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 172
Target Start/End: Original strand, 41638432 - 41638465
Alignment:
Q  139 ttatacataagcacttgtatgataagtgcttaat 172  Q
    |||||||||||||||| |||||||||||||||||    
T  41638432 ttatacataagcacttatatgataagtgcttaat 41638465  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 163
Target Start/End: Complemental strand, 42550193 - 42550165
Alignment:
Q  135 tagcttatacataagcacttgtatgataa 163  Q
    |||||||||||||||||||||||||||||    
T  42550193 tagcttatacataagcacttgtatgataa 42550165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 50764489 - 50764521
Alignment:
Q  132 aaatagcttatacataagcacttgtatgataag 164  Q
    |||||||||||||||||||| ||||||||||||    
T  50764489 aaatagcttatacataagcaattgtatgataag 50764521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 163
Target Start/End: Complemental strand, 45078264 - 45078217
Alignment:
Q  116 tttatttttattatgaaaatagcttatacataagcacttgtatgataa 163  Q
    ||||||||| |||| |||||||||||||||||||||||| ||||||||    
T  45078264 tttatttttgttataaaaatagcttatacataagcacttatatgataa 45078217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 178
Target Start/End: Original strand, 5369807 - 5369850
Alignment:
Q  135 tagcttatacataagcacttgtatgataagtgcttaattaaatt 178  Q
    |||||||||||||||||||| | || ||||||||||||||||||    
T  5369807 tagcttatacataagcacttatttgctaagtgcttaattaaatt 5369850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 39362095 - 39362040
Alignment:
Q  121 ttttattatgaaaatagcttatacataagcacttgtatgataagtgcttaattaaa 176  Q
    |||||||||||||||||||||||||||||  ||| |   |||||||||||||||||    
T  39362095 ttttattatgaaaatagcttatacataagtgcttatgctataagtgcttaattaaa 39362040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 29574715 - 29574760
Alignment:
Q  131 aaaatagcttatacataagcacttgtatgataagtgcttaattaaa 176  Q
    ||||||||||||||||||||| || ||||||||  |||||||||||    
T  29574715 aaaatagcttatacataagcatttatatgataaacgcttaattaaa 29574760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 2732338 - 2732387
Alignment:
Q  126 ttatgaaaatagcttatacataagcacttgtatgataagtgcttaattaa 175  Q
    |||| |||||||||||||||||| |||||| |||||| ||||||||||||    
T  2732338 ttataaaaatagcttatacataaacacttgcatgataggtgcttaattaa 2732387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 31668800 - 31668838
Alignment:
Q  132 aaatagcttatacataagcacttgtatgataagtgctta 170  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  31668800 aaatagcttatacataagcacttatatgataattgctta 31668838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 3217304 - 3217336
Alignment:
Q  131 aaaatagcttatacataagcacttgtatgataa 163  Q
    |||||||||||||||||||||||| ||||||||    
T  3217304 aaaatagcttatacataagcacttatatgataa 3217336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 34198387 - 34198347
Alignment:
Q  135 tagcttatacataagcacttgtatgataagtgcttaattaa 175  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  34198387 tagcttgtacataagcacttatatgataagtgcttaattaa 34198347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 29365589 - 29365542
Alignment:
Q  117 ttatttttattatgaaaatagcttatacataagcacttgtatgataag 164  Q
    |||||||||| || |||||||||||||||| ||||||| |||||||||    
T  29365589 ttatttttatcataaaaatagcttatacatgagcacttatatgataag 29365542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 26516253 - 26516215
Alignment:
Q  132 aaatagcttatacataagcacttgtatgataagtgctta 170  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  26516253 aaatagcttatacataagcacttatatgataagcgctta 26516215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 6738511 - 6738556
Alignment:
Q  121 ttttattatgaaaatagcttatacataagcacttgtatgataagtg 166  Q
    |||||||||  |||||||||||||||||| |||| |||||||||||    
T  6738511 ttttattattgaaatagcttatacataagtacttatatgataagtg 6738556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 161
Target Start/End: Original strand, 7096242 - 7096271
Alignment:
Q  132 aaatagcttatacataagcacttgtatgat 161  Q
    ||||||||||||||||||||||||||||||    
T  7096242 aaatagcttatacataagcacttgtatgat 7096271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 10391319 - 10391274
Alignment:
Q  121 ttttattatgaaaatagcttatacataagcacttgtatgataagtg 166  Q
    |||| |||| |||||||||||||| ||||||||| |||||||||||    
T  10391319 ttttgttataaaaatagcttatacgtaagcacttatatgataagtg 10391274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 1191529 - 1191489
Alignment:
Q  131 aaaatagcttatacataagcacttgtatgataagtgcttaa 171  Q
    |||| ||||||||||||||| ||| ||||||||||||||||    
T  1191529 aaaaaagcttatacataagcgcttatatgataagtgcttaa 1191489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 20982250 - 20982282
Alignment:
Q  132 aaatagcttatacataagcacttgtatgataag 164  Q
    ||||||||||||||||||||||| |||||||||    
T  20982250 aaatagcttatacataagcacttatatgataag 20982282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 170
Target Start/End: Complemental strand, 28776931 - 28776891
Alignment:
Q  131 aaaatagcttatacataagcacttgt-atgataagtgctta 170  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  28776931 aaaatagcttatacataagcacttatcatgataagtgctta 28776891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 23819061 - 23819002
Alignment:
Q  116 tttatttttattatgaaaatagcttatacataagcacttgtatgataagtgcttaattaa 175  Q
    ||||| ||| ||||| ||||| ||||||||||| |||||||||||||| |||| ||||||    
T  23819061 tttatatttgttatggaaataacttatacataaacacttgtatgataaatgctaaattaa 23819002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 174
Target Start/End: Original strand, 28582023 - 28582066
Alignment:
Q  131 aaaatagcttatacataagcacttgtatgataagtgcttaatta 174  Q
    ||||||| |||||||||| ||||| |||||||||||||||||||    
T  28582023 aaaatagtttatacataaacacttctatgataagtgcttaatta 28582066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 175
Target Start/End: Original strand, 30207693 - 30207728
Alignment:
Q  140 tatacataagcacttgtatgataagtgcttaattaa 175  Q
    ||||||||||||||| ||||||||||||||||||||    
T  30207693 tatacataagcacttatatgataagtgcttaattaa 30207728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 54414903 - 54414866
Alignment:
Q  133 aatagcttatacataagcacttgtatgataagtgctta 170  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  54414903 aatagcttatacataagcacttatatgataagcgctta 54414866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 43932389 - 43932357
Alignment:
Q  131 aaaatagcttatacataagcacttgtatgataa 163  Q
    ||||||| |||||||||||||||||||||||||    
T  43932389 aaaatagtttatacataagcacttgtatgataa 43932357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 170
Target Start/End: Original strand, 28842971 - 28843010
Alignment:
Q  131 aaaatagcttatacataagcacttgtatgataagtgctta 170  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  28842971 aaaatagcttatacataagcacttatatgataagcgctta 28843010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 168
Target Start/End: Original strand, 16790465 - 16790507
Alignment:
Q  126 ttatgaaaatagcttatacataagcacttgtatgataagtgct 168  Q
    |||| |||||||||||||||||||||||| |||||||| ||||    
T  16790465 ttataaaaatagcttatacataagcacttatatgataaatgct 16790507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 49772771 - 49772817
Alignment:
Q  120 tttttattatgaaaatagcttatacataagcacttgtatgataagtg 166  Q
    |||||||||  |||||||||||||||||| ||||| |||||||||||    
T  49772771 tttttattacaaaaatagcttatacataaacacttatatgataagtg 49772817  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 165
Target Start/End: Original strand, 33307695 - 33307728
Alignment:
Q  132 aaatagcttatacataagcacttgtatgataagt 165  Q
    ||||||||||||||||||||||| ||||||||||    
T  33307695 aaatagcttatacataagcacttatatgataagt 33307728  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 176
Target Start/End: Original strand, 5407580 - 5407616
Alignment:
Q  140 tatacataagcacttgtatgataagtgcttaattaaa 176  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  5407580 tatacataagcacttatataataagtgcttaattaaa 5407616  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 41028966 - 41028998
Alignment:
Q  132 aaatagcttatacataagcacttgtatgataag 164  Q
    ||||||||||||||||||||||| |||||||||    
T  41028966 aaatagcttatacataagcacttatatgataag 41028998  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 17952816 - 17952863
Alignment:
Q  132 aaatagcttatacataagcacttgtatgataagtgcttaattaaattt 179  Q
    |||||||||||| |||||| ||| |||||||||||||| |||||||||    
T  17952816 aaatagcttatatataagctcttatatgataagtgctttattaaattt 17952863  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 175
Target Start/End: Complemental strand, 10150721 - 10150667
Alignment:
Q  121 ttttattatgaaaatagcttatacataagcacttgtatgataagtgcttaattaa 175  Q
    |||||||||  ||||| ||||||||||| ||||| ||| ||||||||||||||||    
T  10150721 ttttattatagaaataacttatacataaacacttatataataagtgcttaattaa 10150667  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 44606192 - 44606241
Alignment:
Q  121 ttttattatgaaaatagcttatacataagcacttgtatgataagtgctta 170  Q
    |||| ||||||||||||||||||||||| ||||| ||| ||||| |||||    
T  44606192 ttttgttatgaaaatagcttatacataaacacttatataataagcgctta 44606241  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 172
Target Start/End: Complemental strand, 37053541 - 37053509
Alignment:
Q  140 tatacataagcacttgtatgataagtgcttaat 172  Q
    ||||||||||||||| |||||||||||||||||    
T  37053541 tatacataagcacttatatgataagtgcttaat 37053509  T

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Target: scaffold0654 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 6752 - 6790
Alignment:
Q  132 aaatagcttatacataagcacttgtatgataagtgctta 170  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  6752 aaatagtttatacataagcacttatatgataagtgctta 6790  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 116671 - 116709
Alignment:
Q  132 aaatagcttatacataagcacttgtatgataagtgctta 170  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  116671 aaatagtttatacataagcacttatatgataagtgctta 116709  T

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