View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12737_low_5 (Length: 508)
Name: NF12737_low_5
Description: NF12737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12737_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 13 - 492
Target Start/End: Original strand, 7754282 - 7754761
Alignment:
| Q |
13 |
cgttcactggggtttgatgttgattctttccgtacaatctctctacccatgtcttgtattagatcatgcatttgtagcaaaccattttcatcaacagtta |
112 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7754282 |
cgttcaccagggtttgatgttgattctttccgtacaatctctctacccatgtcttgtattagatcatgcatttgtagcaaaccattttcatcaacagtta |
7754381 |
T |
|
| Q |
113 |
tgagacatttactattaaacgctcgtataactgggtagaaatcacaagcgtctagtatccttttagcataatcccatctttcccctttgaagaaacacgc |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7754382 |
tgagacatttactattaaacgctcgtataactgggtagaaatcacaagcgtctagtatccttttagcataatcccatctttcccctttgaagaaacacgc |
7754481 |
T |
|
| Q |
213 |
gatgtctagaaaaattttctggtccaagtcagataggcctttgtagctgatttccattacaccttgaatctcagcatctgggacctttctatatttctga |
312 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7754482 |
gatgtctagaaaaattttctggtccaagtcagataggcctttgtagctgatttccattacaccttgaatctcagcatctgggacctttctatatttctga |
7754581 |
T |
|
| Q |
313 |
agttcaatatcccattcttcaatgcttttacctttcaagttggatcctattactcctaaagccaatggaataccctttgcataacttattgcatgagaag |
412 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7754582 |
agttcaatatcccattcttcaatgcttttacctttcaagttggatcctattactcttaaagccaatggaataccctttgcataacttattgcatgagaag |
7754681 |
T |
|
| Q |
413 |
atattttttcaaagttttctacaggtctgctcatgttaaaggcataccaacaaaagagttcagtggattcatgatgattt |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7754682 |
atattttttcaaagttttctacaggtctgctcatgttaaaggcataccaacaaaagagttcagtggattcatgatgattt |
7754761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 13 - 492
Target Start/End: Original strand, 7761381 - 7761860
Alignment:
| Q |
13 |
cgttcactggggtttgatgttgattctttccgtacaatctctctacccatgtcttgtattagatcatgcatttgtagcaaaccattttcatcaacagtta |
112 |
Q |
| |
|
||||||| ||||||||||| || || ||||| |||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||| |
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|
| T |
7761381 |
cgttcaccagggtttgatgtcgactccttccgaacaatctctctacccatgtcttgtattaaatcatgcatttctatacaaccattttcatcaacagtta |
7761480 |
T |
|
| Q |
113 |
tgagacatttactattaaacgctcgtataactgggtagaaatcacaagcgtctagtatccttttagcataatcccatctttcccctttgaagaaacacgc |
212 |
Q |
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||||||||||||| ||| |||||||||||||| | ||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| ||||| || |
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| T |
7761481 |
agagacatttactaacaaatactcgtataactgggaaaaaatcacaagcttcttgtatccttttaacataatcccatctttcccctttgaaaaaacaagc |
7761580 |
T |
|
| Q |
213 |
gatgtctagaaaaattttctggtccaagtcagataggcctttgtagctgatttccattacaccttgaatctcagcatctgggacctttctatatttctga |
312 |
Q |
| |
|
||||| |||||| ||| || ||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||| |||||||||||| |||| |
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|
| T |
7761581 |
aatgtccagaaaagctttttgttccaagtcagataggccattgtagctgatttccaatacaccctgaatctcagcatctggaacctttctatatctctgc |
7761680 |
T |
|
| Q |
313 |
agttcaatatcccattcttcaatgcttttacctttcaagttggatcctattactcctaaagccaatggaataccctttgcataacttattgcatgagaag |
412 |
Q |
| |
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| ||||||||||||||| || ||||| ||||||||||| |||||||||||| || |||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
7761681 |
aattcaatatcccattcctctatgctcttacctttcaaattggatcctattgcttttaaagccaatggaataccttttgcataacttattgcttgagaag |
7761780 |
T |
|
| Q |
413 |
atattttttcaaagttttctacaggtctgctcatgttaaaggcataccaacaaaagagttcagtggattcatgatgattt |
492 |
Q |
| |
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| |||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
7761781 |
agattttttcaaagttttctacaggtctactcatattaaaggcataccaacagaagagttcagtggattcatgatgattt |
7761860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 492
Target Start/End: Original strand, 7837798 - 7838277
Alignment:
| Q |
13 |
cgttcactggggtttgatgttgattctttccgtacaatctctctacccatgtcttgtattagatcatgcatttgtagcaaaccattttcatcaacagtta |
112 |
Q |
| |
|
||||||| |||||||| || ||||||||||| | |||||||||||||||||||||||||||||||||||| | || ||||||||||||||||| ||| |
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|
| T |
7837798 |
cgttcaccagggtttgaagtcgattctttccgaataatctctctacccatgtcttgtattagatcatgcatctctaaacaaccattttcatcaacaatta |
7837897 |
T |
|
| Q |
113 |
tgagacatttactattaaacgctcgtataactgggtagaaatcacaagcgtctagtatccttttagcataatcccatctttcccctttgaagaaacacgc |
212 |
Q |
| |
|
|||||||| ||| ||| |||||||||||||||||||| ||||||| || |||||||||||| |||||||||||||||| |||||||| ||||| || |
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|
| T |
7837898 |
acagacatttgctaacaaagactcgtataactgggtagaaaccacaagcatcgagtatccttttaacataatcccatctttcgcctttgaaaaaacaagc |
7837997 |
T |
|
| Q |
213 |
gatgtctagaaaaattttctggtccaagtcagataggcctttgtagctgatttccattacaccttgaatctcagcatctgggacctttctatatttctga |
312 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||| |
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|
| T |
7837998 |
aatgtccagaaaaactttctggtccaagtcagataggcctttgtagctgatttccagtacactttgaatctcagcatctggaacctttctatatttctgc |
7838097 |
T |
|
| Q |
313 |
agttcaatatcccattcttcaatgcttttacctttcaagttggatcctattactcctaaagccaatggaataccctttgcataacttattgcatgagaag |
412 |
Q |
| |
|
|||||||||| |||||| | ||||| ||||||||||| ||||||||||| ||| |||| ||||||||||||||| ||||||||||||||| |||| || |
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| T |
7838098 |
agttcaatatgccattcatgtatgctcttacctttcaaattggatcctatgactgttaaaaccaatggaataccctgtgcataacttattgcttgagtag |
7838197 |
T |
|
| Q |
413 |
atattttttcaaagttttctacaggtctgctcatgttaaaggcataccaacaaaagagttcagtggattcatgatgattt |
492 |
Q |
| |
|
| |||||| ||||||||||| ||||||||||||| |||||||||||| ||||||||||||| |||||||||||| |||| |
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|
| T |
7838198 |
agatttttgcaaagttttctgcaggtctgctcatattaaaggcatacatacaaaagagttcaatggattcatgattattt |
7838277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 255 - 380
Target Start/End: Complemental strand, 7828332 - 7828208
Alignment:
| Q |
255 |
gtagctgatttccattacaccttgaatctcagcatctgggacctttctatattt-ctgaagttcaatatcccattcttcaatgcttttacctttcaagtt |
353 |
Q |
| |
|
|||||| ||||| | |||||||||||| ||||||| ||| ||||| |||||||| | |||| |||| ||||||||||| ||||||||||| ||||| || |
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|
| T |
7828332 |
gtagcttatttcaagtacaccttgaatatcagcatgtggaaccttcctatattttcccaagt-caat-tcccattcttctatgcttttacccttcaaatt |
7828235 |
T |
|
| Q |
354 |
ggatcctattactcctaaagccaatgg |
380 |
Q |
| |
|
||| |||||||| | |||||| ||||| |
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|
| T |
7828234 |
ggaacctattacacataaagctaatgg |
7828208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 7828538 - 7828501
Alignment:
| Q |
46 |
acaatctctctacccatgtcttgtattagatcatgcat |
83 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||| |
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|
| T |
7828538 |
acaacctctctacccatatcttgtattagatcatgcat |
7828501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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