View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12737_low_6 (Length: 502)
Name: NF12737_low_6
Description: NF12737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12737_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 7 - 490
Target Start/End: Complemental strand, 43995186 - 43994703
Alignment:
| Q |
7 |
aaaacaaaacgcagtgaagaagaaaacgtacacacgtcacactcagatctctccttctttaatactacaacaacactttcacttccattaatggcttctt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43995186 |
aaaacaaaacgcagtgaagaagaaaacgtacacacgtcacactcagatctctccttctttaatactacaacaacactttcacttccattaatggcttctt |
43995087 |
T |
|
| Q |
107 |
gaccaggtatcaactcttcttctttttcatttctttgctcaatttcactttaactcatgttcttgtttatttgtgtagattctttaatttccgttccaat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43995086 |
gaccaggtatcaactcttcttctttttcatttctttgctcaatttcactttaactcatgttcttgtttatttgtttagattctttaatttccgttccaat |
43994987 |
T |
|
| Q |
207 |
ctagggtttagtttttgctaaatatcctagattcaaagatttagtaattttatagcttatatattaatcagttctgatttggagttatacggttttgcta |
306 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43994986 |
ctagggtttagtttctgctaaatatcctagattcaaagatttagtaattttatagcttatatattaatcagttctgatttggatttatacggttttgcta |
43994887 |
T |
|
| Q |
307 |
gtttattgagaatcgattttgatttcaattcagtgacatctctagtaacgattgtttggacaagtaagtggatcatatgaagtgttcatttggttggatt |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43994886 |
gtttattgagaatcgattttgatttcaattcagtgacatctctagtaacgattgtttggacaagtaagtggatcatatgaagtgttcatttggtttgatt |
43994787 |
T |
|
| Q |
407 |
gcttcaccacctatcatccattcagatgttcaatttttccaagcttcttctaataaccaaatttccctcagagtcacacaggtt |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43994786 |
gcttcaccacctatcatccattcagatgttcaatttttccaagcttcttctaataaccaaatttccctcagagtcacacaggtt |
43994703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 337
Target Start/End: Original strand, 26688443 - 26688481
Alignment:
| Q |
299 |
ttttgctagtttattgagaatcgattttgatttcaattc |
337 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
26688443 |
ttttgctagtttattgagaatcgattttaatttaaattc |
26688481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 337
Target Start/End: Original strand, 26958174 - 26958212
Alignment:
| Q |
299 |
ttttgctagtttattgagaatcgattttgatttcaattc |
337 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
26958174 |
ttttgctagtttattgagaatcgattttaatttaaattc |
26958212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 337
Target Start/End: Original strand, 30478587 - 30478625
Alignment:
| Q |
299 |
ttttgctagtttattgagaatcgattttgatttcaattc |
337 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
30478587 |
ttttgctagtttattgagaatcgattttaatttgaattc |
30478625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 337
Target Start/End: Complemental strand, 48013662 - 48013624
Alignment:
| Q |
299 |
ttttgctagtttattgagaatcgattttgatttcaattc |
337 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
48013662 |
ttttgctagtttattgagaatcgattttaatttgaattc |
48013624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 337
Target Start/End: Original strand, 19521619 - 19521657
Alignment:
| Q |
299 |
ttttgctagtttattgagaatcgattttgatttcaattc |
337 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
19521619 |
ttttgctagtttattgagaatcgattttaatttgaattc |
19521657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 336
Target Start/End: Original strand, 45811001 - 45811038
Alignment:
| Q |
299 |
ttttgctagtttattgagaatcgattttgatttcaatt |
336 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
45811001 |
ttttgctagtttattgagaatcgattttaatttgaatt |
45811038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University