View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12737_low_8 (Length: 427)
Name: NF12737_low_8
Description: NF12737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12737_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 20 - 418
Target Start/End: Complemental strand, 42998227 - 42997829
Alignment:
| Q |
20 |
gttcccagttacgaaaaaataaataataattttcgttttgctctcattcttttatttacatattcgtcactgtcggtaggcacagaatttaacactaaca |
119 |
Q |
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| T |
42998227 |
gttcccagttatgaaaaaataaataataattttcgttttgctctcattcttttatttacatattcgtcactgtcggtaggcacagaatttaacactaaca |
42998128 |
T |
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| Q |
120 |
gcctccacttggaccgtgttcgtttaattaggaacataaaaatctggcttcaccactgtcttatattatattctccaaccttataaaaaagagaatgaat |
219 |
Q |
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| T |
42998127 |
gcctccacttggactgtgttcgtttaattaggaacataaaaatctggcttcaccactgtcttatattatattctccaaccttataaaaaagagaatgaat |
42998028 |
T |
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| Q |
220 |
tctttatgcaattactagtacttcaaaaattggatgtatttgtcagattgctttgaagtgccaacgtgaaaaaatataaagggtgtccaagatgagcttc |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42998027 |
tctttatgcaattactagtacttcaaaaattggatgtatttgtgagattgctttgaagtgccaacgtgaaaaaatataaagggtgtccatgatgagcttc |
42997928 |
T |
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| Q |
320 |
cattcttccacggatacaatacattaggatctgtatctcaacattagcatgtgacacatgctgcctactaattctaagatgggttgtgttcagtgaacg |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42997927 |
cattcttccacggatacaatacattaggatctgtatctcaacattagcatgtgacacatgctgcctactaattctaagatgggttgtgttcagtgaacg |
42997829 |
T |
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