View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12738_high_13 (Length: 277)

Name: NF12738_high_13
Description: NF12738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12738_high_13
NF12738_high_13
[»] chr4 (8 HSPs)
chr4 (11-261)||(4078739-4078988)
chr4 (29-183)||(47748323-47748477)
chr4 (26-102)||(50076768-50076844)
chr4 (182-258)||(12607318-12607394)
chr4 (185-253)||(21678750-21678818)
chr4 (26-90)||(50076066-50076130)
chr4 (194-234)||(14643486-14643526)
chr4 (191-234)||(47204371-47204414)
[»] chr3 (5 HSPs)
chr3 (26-183)||(41405923-41406080)
chr3 (26-112)||(7219452-7219538)
chr3 (202-258)||(3400089-3400145)
chr3 (127-186)||(7219393-7219452)
chr3 (191-250)||(40199932-40199993)
[»] chr8 (2 HSPs)
chr8 (26-186)||(8865134-8865294)
chr8 (29-188)||(25584507-25584666)
[»] chr6 (6 HSPs)
chr6 (29-170)||(10795403-10795543)
chr6 (50-180)||(20820731-20820860)
chr6 (182-254)||(13281106-13281178)
chr6 (26-182)||(15581691-15581848)
chr6 (192-254)||(3322604-3322666)
chr6 (182-257)||(13483792-13483867)
[»] chr5 (5 HSPs)
chr5 (185-258)||(16842554-16842627)
chr5 (182-251)||(24549987-24550056)
chr5 (182-236)||(24509992-24510046)
chr5 (29-81)||(5323885-5323937)
chr5 (28-180)||(34540900-34541052)
[»] scaffold0161 (1 HSPs)
scaffold0161 (182-258)||(5579-5654)
[»] chr2 (2 HSPs)
chr2 (182-254)||(35655934-35656006)
chr2 (28-145)||(5292116-5292233)
[»] chr7 (2 HSPs)
chr7 (182-254)||(17881836-17881908)
chr7 (202-254)||(6004358-6004412)
[»] chr1 (1 HSPs)
chr1 (190-251)||(9375692-9375753)
[»] scaffold0005 (1 HSPs)
scaffold0005 (194-234)||(173766-173806)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 4078739 - 4078988
Alignment:
Q  11 catagggaaaaacttagtttcatcattatgctaatgagttagagattattcgagatttcatgcaaaaagattggacaatatctcttcatcacacccttca 110  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  4078739 catagggaaaatcttagtttcatcattatgctaatgagttagagattattcgagattt-atgcaaaaagattagacaatatctcttcatcacacccttca 4078837  T
Q  111 cgaagggaatgcttgtgcagatgtgctagcaaagttgggagctattaacgtagatcctctatttgtgcttcaagaggcagtgaacaaggtgtgttcacat 210  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4078838 cgaagggaatacttgtgcagatgtgctagcaaagttgggagctattaacgtagatcctctatttgtgcttcaagaggcagtgaacaaggtgtgttcacat 4078937  T
Q  211 aagactaggaacttatactattgagagttaatttcctttcttggcatgaat 261  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  4078938 aagactaggaactgatactattgagagttaatttcctttcttgacatgaat 4078988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 29 - 183
Target Start/End: Complemental strand, 47748477 - 47748323
Alignment:
Q  29 ttcatcattatgctaatgagttagagattattcgagatttcatgcaaaaagattggacaatatctcttcatcacacccttcacgaagggaatgcttgtgc 128  Q
    ||||||||||||| |||||| ||||||||||| ||||||||||| |||||||||| || |||||||||||||||||  ||| ||||||||||||||||||    
T  47748477 ttcatcattatgcgaatgagctagagattattagagatttcatgaaaaaagattgaacgatatctcttcatcacacttttcgcgaagggaatgcttgtgc 47748378  T
Q  129 agatgtgctagcaaagttgggagctattaacgtagatcctctatttgtgcttcaa 183  Q
    |||||||||||||||||||| ||||||| |||||||||||||| |||||||||||    
T  47748377 agatgtgctagcaaagttggaagctattcacgtagatcctctaattgtgcttcaa 47748323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 50076768 - 50076844
Alignment:
Q  26 agtttcatcattatgctaatgagttagagattattcgagatttcatgcaaaaagattggacaatatctcttcatcac 102  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||| ||||||    
T  50076768 agtttcatcattatgctaatgagctagagattattagagatttcatgaaaaaagattggacaatagctctgcatcac 50076844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 12607394 - 12607318
Alignment:
Q  182 aagaggcagtgaacaaggtgtgttcacataagactaggaacttatactattgagagttaatttcctttcttggcatg 258  Q
    |||||||| |||||||||| |||||||||||||||||||||| |||||||| ||| |  ||||||||||||||||||    
T  12607394 aagaggcactgaacaaggtttgttcacataagactaggaactaatactatttagaatggatttcctttcttggcatg 12607318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 21678750 - 21678818
Alignment:
Q  185 aggcagtgaacaaggtgtgttcacataagactaggaacttatactattgagagttaatttcctttcttg 253  Q
    |||| |||||||| || |||||||||||||||||||||| |||||||||||||| |||||||| |||||    
T  21678750 aggcggtgaacaaagtttgttcacataagactaggaactaatactattgagagtgaatttcctatcttg 21678818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 50076066 - 50076130
Alignment:
Q  26 agtttcatcattatgctaatgagttagagattattcgagatttcatgcaaaaagattggacaata 90  Q
    ||||||||||||||| ||| ||  ||||||||||| ||||||||||| |||||||||||||||||    
T  50076066 agtttcatcattatgttaaagaactagagattattagagatttcatgaaaaaagattggacaata 50076130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 14643526 - 14643486
Alignment:
Q  194 acaaggtgtgttcacataagactaggaacttatactattga 234  Q
    ||||||| |||||||||||||||||||||| ||||||||||    
T  14643526 acaaggtttgttcacataagactaggaactgatactattga 14643486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 234
Target Start/End: Complemental strand, 47204414 - 47204371
Alignment:
Q  191 tgaacaaggtgtgttcacataagactaggaacttatactattga 234  Q
    ||||||| ||||||||| ||||||||||||||| ||||||||||    
T  47204414 tgaacaatgtgtgttcatataagactaggaactaatactattga 47204371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 41405923 - 41406080
Alignment:
Q  26 agtttcatcattatgctaatgagttagagattattcgagatttcatgcaaaaagattggacaatatctcttcatcacacccttcacgaagggaatgcttg 125  Q
    ||||||| |||||||||||||||   ||||||||| ||||||||||| ||| |||||| ||| ||||||||||||||||| ||| |||||||||||||||    
T  41405923 agtttcaacattatgctaatgagcccgagattattagagatttcatgaaaatagattgaacattatctcttcatcacacctttcgcgaagggaatgcttg 41406022  T
Q  126 tgcagatgtgctagcaaagttgggagctattaacgtagatcctctatttgtgcttcaa 183  Q
    |||||||||||||| |||||||||||||||| ||||||||||| || |||||||||||    
T  41406023 tgcagatgtgctagtaaagttgggagctattgacgtagatcctttaattgtgcttcaa 41406080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 7219538 - 7219452
Alignment:
Q  26 agtttcatcattatgctaatgagttagagattattcgagatttcatgcaaaaagattggacaatatctcttcatcacacccttcacg 112  Q
    |||||| |||||||||||||||| ||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7219538 agtttcgtcattatgctaatgagctagcgtttattagagatttcatgcaaaaagattggacaatatctcttcatcacacctttcacg 7219452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 3400089 - 3400145
Alignment:
Q  202 tgttcacataagactaggaacttatactattgagagttaatttcctttcttggcatg 258  Q
    |||||||||||||||||||||| || |||||||||||  ||||||||||||||||||    
T  3400089 tgttcacataagactaggaactaatgctattgagagtggatttcctttcttggcatg 3400145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 7219452 - 7219393
Alignment:
Q  127 gcagatgtgctagcaaagttgggagctattaacgtagatcctctatttgtgcttcaagag 186  Q
    |||||||||||| |||||||| ||||||||||   ||||||||||||| || ||||||||    
T  7219452 gcagatgtgctaacaaagttgagagctattaaatgagatcctctatttatgtttcaagag 7219393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 40199993 - 40199932
Alignment:
Q  191 tgaacaaggtgtgttcacataagactag--gaacttatactattgagagttaatttcctttc 250  Q
    |||||||||| |||||| ||||||||||  ||||| |||||||||||||| |||||| ||||    
T  40199993 tgaacaaggtttgttcatataagactagacgaactaatactattgagagtgaatttcatttc 40199932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 26 - 186
Target Start/End: Complemental strand, 8865294 - 8865134
Alignment:
Q  26 agtttcatcattatgctaatgagttagagattattcgagatttcatgcaaaaagattggacaatatctcttcatcacacccttcacgaagggaatgcttg 125  Q
    |||||||||||||||||||||||||||| ||||||  |||||||||| ||||||| |||||||||| | ||||||||||| |||  ||||||||||||||    
T  8865294 agtttcatcattatgctaatgagttagaaattattaaagatttcatgaaaaaagaatggacaatatttattcatcacacctttcgtgaagggaatgcttg 8865195  T
Q  126 tgcagatgtgctagcaaagttgggagctattaacgtagatcctctatttgtgcttcaagag 186  Q
    |||||| |||||||||||||||| ||||  |||||||||||||||| || | |||||||||    
T  8865194 tgcagacgtgctagcaaagttggaagcttctaacgtagatcctctaattatacttcaagag 8865134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 29 - 188
Target Start/End: Original strand, 25584507 - 25584666
Alignment:
Q  29 ttcatcattatgctaatgagttagagattattcgagatttcatgcaaaaagattggacaatatctcttcatcacacccttcacgaagggaatgcttgtgc 128  Q
    |||||||||||  ||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| |||| ||| || |||| |    
T  25584507 ttcatcattatcataatgagctacagattattagagatttcatgcaaaaagattggacaataactcttcatcacacctttcgcgaaaggagtgtttgtac 25584606  T
Q  129 agatgtgctagcaaagttgggagctattaacgtagatcctctatttgtgcttcaagaggc 188  Q
    | || ||| ||||||| |||||||||||| ||| ||||||||| |||||||||| |||||    
T  25584607 aaatatgcaagcaaagctgggagctattatcgttgatcctctaattgtgcttcaggaggc 25584666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 170
Target Start/End: Original strand, 10795403 - 10795543
Alignment:
Q  29 ttcatcattatgctaatgagttagagattattcgagatttcatgcaaaaagattggacaatatctcttcatcacacccttcacgaagggaatgcttgtgc 128  Q
    |||||||||||||||||||| ||||||||||  ||||||||||| |||||||||| |||||| |||| |||||| || |||||| || ||||||||  ||    
T  10795403 ttcatcattatgctaatgagctagagattataagagatttcatgaaaaaagattgaacaatagctctgcatcacgcctttcacg-agagaatgcttacgc 10795501  T
Q  129 agatgtgctagcaaagttgggagctattaacgtagatcctct 170  Q
    ||||||||||||||||||   ||||||||| |||||||||||    
T  10795502 agatgtgctagcaaagttaaaagctattaaagtagatcctct 10795543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 50 - 180
Target Start/End: Complemental strand, 20820860 - 20820731
Alignment:
Q  50 tagagattattcgagatttcatgcaaaaagattggacaatatctcttcatcacacccttcacgaagggaatgcttgtgcagatgtgctagcaaagttggg 149  Q
    ||||||||||| ||  ||||||| |||||||||| ||||||||||||||||||||| |||  ||||| |||||||||||| || |||||||||||||| |    
T  20820860 tagagattattggaattttcatgaaaaaagattgaacaatatctcttcatcacacctttcgtgaaggaaatgcttgtgca-atatgctagcaaagttgag 20820762  T
Q  150 agctattaacgtagatcctctatttgtgctt 180  Q
    ||||| |||||||||| ||||| ||||||||    
T  20820761 agctactaacgtagattctctaattgtgctt 20820731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 13281106 - 13281178
Alignment:
Q  182 aagaggcagtgaacaaggtgtgttcacataagactaggaacttatactattgagagttaatttcctttcttgg 254  Q
    |||||| | |||||||||| |||||||||  ||||||||||| |||||||||||||| |||||||||||||||    
T  13281106 aagaggtaatgaacaaggtttgttcacatgtgactaggaactgatactattgagagtgaatttcctttcttgg 13281178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 182
Target Start/End: Original strand, 15581691 - 15581848
Alignment:
Q  26 agtttcatcattatgctaatgagttagagattattcgagattt-catgcaaaaagattggacaatatctcttcatcacacccttcacgaagggaatgctt 124  Q
    |||||||||||||||||||| || ||||||| |||  | |||| | | || | |||||||||||||| ||| ||||||||| |||  ||||| |||||||    
T  15581691 agtttcatcattatgctaataagctagagataattataaattttcttacatagagattggacaatatatctccatcacacctttcgtgaaggaaatgctt 15581790  T
Q  125 gtgcagatgtgctagcaaagttgggagctattaacgtagatcctctatttgtgcttca 182  Q
     ||  |||||| || ||||| | ||| ||| ||| ||||||| |||| ||||||||||    
T  15581791 atgatgatgtgttatcaaagctcggaactaataatgtagatcatctaattgtgcttca 15581848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 254
Target Start/End: Complemental strand, 3322666 - 3322604
Alignment:
Q  192 gaacaaggtgtgttcacataagactaggaacttatactattgagagttaatttcctttcttgg 254  Q
    |||||||||  ||||| |||| ||||| |||| |||||||||||||| |||||||||||||||    
T  3322666 gaacaaggttggttcatataaaactagaaactaatactattgagagtgaatttcctttcttgg 3322604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 13483867 - 13483792
Alignment:
Q  182 aagaggcagtgaacaaggtgtgttcacataagactaggaacttatactattgagagttaatttcctttcttggcat 257  Q
    ||||| || |||||||||| ||||||||||||| || ||||| |||| |||||| || || || ||||||||||||    
T  13483867 aagagacaatgaacaaggtttgttcacataagattaagaactgataccattgagtgtgaactttctttcttggcat 13483792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 185 - 258
Target Start/End: Complemental strand, 16842627 - 16842554
Alignment:
Q  185 aggcagtgaacaaggtgtgttcacataagactaggaacttatactattgagagttaatttcctttcttggcatg 258  Q
    |||||||||||||||| ||||||||||||||||| |||| ||| |||||||||| |||||||||||||||||||    
T  16842627 aggcagtgaacaaggtttgttcacataagactagaaactaatattattgagagtgaatttcctttcttggcatg 16842554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 24550056 - 24549987
Alignment:
Q  182 aagaggcagtgaacaaggtgtgttcacataagactaggaacttatactattgagagttaatttcctttct 251  Q
    |||||||||||||||| || ||||||||||||||||| |||| ||| ||||||||||  |||||||||||    
T  24550056 aagaggcagtgaacaaagtttgttcacataagactagaaactgatattattgagagtggatttcctttct 24549987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 24510046 - 24509992
Alignment:
Q  182 aagaggcagtgaacaaggtgtgttcacataagactaggaacttatactattgaga 236  Q
    |||||| |||||||||||| |||| ||||||||||||||||| ||||||||||||    
T  24510046 aagaggaagtgaacaaggtttgttaacataagactaggaactgatactattgaga 24509992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 5323885 - 5323937
Alignment:
Q  29 ttcatcattatgctaatgagttagagattattcgagatttcatgcaaaaagat 81  Q
    ||||||| |||||||||||  ||||||||||| ||||||||||||||||||||    
T  5323885 ttcatcactatgctaatgaaatagagattatttgagatttcatgcaaaaagat 5323937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 180
Target Start/End: Original strand, 34540900 - 34541052
Alignment:
Q  28 tttcatcattatgctaatgagttagagattattcgagatttcatgcaaaaagattggacaatatctcttcatcacacccttcacgaagggaatgcttgtg 127  Q
    ||||||||  ||||||||||||||||||||||| |||||||||| || ||| ||||    |||| | ||||||||||| |||   ||||||||  |||||    
T  34540900 tttcatcaccatgctaatgagttagagattattagagatttcatacagaaatattgtgtcatatttgttcatcacacctttcgtaaagggaatatttgtg 34540999  T
Q  128 cagatgtgctagcaaagttgggagctattaacgtagatcctctatttgtgctt 180  Q
    || || | |||| |||| |||||  ||||||| |||||| |||| || |||||    
T  34541000 catattttctagaaaagatgggatatattaacttagatcttctaattatgctt 34541052  T

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Target: scaffold0161 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 5579 - 5654
Alignment:
Q  182 aagaggcagtgaacaaggtgtgttcacataagactaggaacttatactattgagagttaatttcctttcttggcatg 258  Q
    ||||| ||||||||||||| || ||||||||||||| ||||| |||||||||| ||| || ||||||||||||||||    
T  5579 aagagacagtgaacaaggtttgctcacataagactatgaactaatactattgaaagtgaa-ttcctttcttggcatg 5654  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 35656006 - 35655934
Alignment:
Q  182 aagaggcagtgaacaaggtgtgttcacataagactaggaacttatactattgagagttaatttcctttcttgg 254  Q
    |||||| |||||||||||| |||||||||||||||||||| | |||||||| ||||| |||||| ||| ||||    
T  35656006 aagaggaagtgaacaaggtttgttcacataagactaggaattgatactatttagagtgaatttctttttttgg 35655934  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 145
Target Start/End: Complemental strand, 5292233 - 5292116
Alignment:
Q  28 tttcatcattatgctaatgagttagagattattcgagatttcatgcaaaaagattggacaatatctcttcatcacacccttcacgaagggaatgcttgtg 127  Q
    ||||||||| |||||||||||  |||||||||| ||||||||||| | |||||||| |  |||| | |||  |||||  ||| | |||||| || ||||     
T  5292233 tttcatcatcatgctaatgagccagagattattagagatttcatgtacaaagattgtatcatatattttcgccacacgtttcgctaagggagtgtttgta 5292134  T
Q  128 cagatgtgctagcaaagt 145  Q
    ||||||| ||||||||||    
T  5292133 cagatgtactagcaaagt 5292116  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 17881908 - 17881836
Alignment:
Q  182 aagaggcagtgaacaaggtgtgttcacataagactaggaacttatactattgagagttaatttcctttcttgg 254  Q
    |||||||||||| |||||| ||||||||||||| ||||| || |||||||||||| |  ||||||||| ||||    
T  17881908 aagaggcagtgaccaaggtttgttcacataagagtaggagctaatactattgagaatagatttcctttgttgg 17881836  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 6004412 - 6004358
Alignment:
Q  202 tgttcacataagactagg--aacttatactattgagagttaatttcctttcttgg 254  Q
    |||||| |||||||||||  |||| |||||||||||||| |||||||||||||||    
T  6004412 tgttcatataagactaggtgaactaatactattgagagtgaatttcctttcttgg 6004358  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 9375692 - 9375753
Alignment:
Q  190 gtgaacaaggtgtgttcacataagactaggaacttatactattgagagttaatttcctttct 251  Q
    |||||||| || |||||||||||||||| ||||| |||||||||||||   |||||||||||    
T  9375692 gtgaacaaagtttgttcacataagactaagaactaatactattgagagggtatttcctttct 9375753  T

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Target: scaffold0005 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 173766 - 173806
Alignment:
Q  194 acaaggtgtgttcacataagactaggaacttatactattga 234  Q
    ||||||| |||||||||||||||||||||| ||||||||||    
T  173766 acaaggtttgttcacataagactaggaactgatactattga 173806  T

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