View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12738_high_15 (Length: 251)
Name: NF12738_high_15
Description: NF12738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12738_high_15 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 8e-76; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 84 - 251
Target Start/End: Original strand, 35802892 - 35803059
Alignment:
| Q |
84 |
gccttgaatatttttgaatctttgaccataccaatcttctgaatgaaattacttgtgacgatatcactatccatattccctgagactcggatgatggcta |
183 |
Q |
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| T |
35802892 |
gccttgaatttttttgaatctttgaccataccaatcttctcaatgaaattacttgtgacgatgtcactatccatagtccctgaggctcggatgatggcta |
35802991 |
T |
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| Q |
184 |
tttgttctttagcctctgatattcccacagtccattttctgattttagagtattttctaaaagaaatc |
251 |
Q |
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| T |
35802992 |
tttgttctttagcctctgatattcccacagtccattttctgactttagagtattttctaaaagaaatc |
35803059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 107 - 251
Target Start/End: Complemental strand, 35854396 - 35854252
Alignment:
| Q |
107 |
gaccataccaatcttctgaatgaaattacttgtgacgatatcactatccatattccctgagactcggatgatggctatttgttctttagcctctgatatt |
206 |
Q |
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| T |
35854396 |
gaccattccaatcttctcaatgaaattacttgtgacgatgtcactaaccatattccctgagactcggatgatggcaatttgttctttagcctctgatatt |
35854297 |
T |
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| Q |
207 |
cccacagtccattttctgattttagagtattttctaaaagaaatc |
251 |
Q |
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| T |
35854296 |
gccacagtccattttctgcctttagagtattttctaaaagaaatc |
35854252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 82 - 251
Target Start/End: Complemental strand, 10520925 - 10520756
Alignment:
| Q |
82 |
cagccttgaatatttttgaatctttgaccataccaatcttctgaatgaaattacttgtgacgatatcactatccatattccctgagactcggatgatggc |
181 |
Q |
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| T |
10520925 |
cagccttgatttcttttgacgctttgaccataccaatcttctcaatgaacttacttgtgacaatatccgtacccatagtccctgagactcggatgatggc |
10520826 |
T |
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| Q |
182 |
tatttgttctttagcctctgatattcccacagtccattttctgattttagagtattttctaaaagaaatc |
251 |
Q |
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| T |
10520825 |
tatttgttctttcgcctctgatattccaacagtccattttctaactttagagtatttttcaaaagaaatc |
10520756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 35802844 - 35802900
Alignment:
| Q |
8 |
tgagatgaacgaaaatttcctcctacactgtcaatccggacaataacagccttgaat |
64 |
Q |
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| T |
35802844 |
tgagatgcatgaaaatcacctcctacactgtcaatccggacaataaccgccttgaat |
35802900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 56209141 - 56209218
Alignment:
| Q |
161 |
ccctgagactcggatgatggctatttgttctttagcctctgatattcccacagtccattttctgattttagagtattt |
238 |
Q |
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| T |
56209141 |
ccctgaggctcgaatgatggctattagttctttaccctttgatattccaacagtccattttctaattcgagagtattt |
56209218 |
T |
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