View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12738_high_17 (Length: 247)

Name: NF12738_high_17
Description: NF12738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12738_high_17
NF12738_high_17
[»] chr4 (3 HSPs)
chr4 (94-229)||(34512640-34512774)
chr4 (94-229)||(28163333-28163469)
chr4 (94-229)||(44452634-44452771)
[»] chr7 (6 HSPs)
chr7 (94-229)||(8833262-8833397)
chr7 (94-229)||(8082356-8082491)
chr7 (94-229)||(38595051-38595187)
chr7 (94-229)||(37108228-37108364)
chr7 (94-229)||(1066230-1066367)
chr7 (94-173)||(40304201-40304279)
[»] chr8 (5 HSPs)
chr8 (103-229)||(44894032-44894157)
chr8 (94-229)||(32244226-32244363)
chr8 (94-216)||(3866233-3866357)
chr8 (98-163)||(6243801-6243866)
chr8 (94-131)||(44893965-44894003)
[»] chr5 (4 HSPs)
chr5 (94-236)||(37812806-37812947)
chr5 (94-237)||(19333005-19333151)
chr5 (94-229)||(40272788-40272924)
chr5 (98-229)||(43210453-43210587)
[»] chr1 (6 HSPs)
chr1 (98-229)||(52010412-52010542)
chr1 (94-229)||(11397584-11397724)
chr1 (94-229)||(25352505-25352639)
chr1 (94-229)||(52882139-52882274)
chr1 (94-229)||(49768236-49768373)
chr1 (99-225)||(27551126-27551254)
[»] chr3 (6 HSPs)
chr3 (94-229)||(31991635-31991771)
chr3 (94-229)||(44556246-44556383)
chr3 (94-228)||(33475798-33475934)
chr3 (94-235)||(52701707-52701855)
chr3 (94-229)||(8575508-8575643)
chr3 (120-229)||(41927784-41927897)
[»] chr2 (2 HSPs)
chr2 (94-229)||(32318552-32318689)
chr2 (122-229)||(3118524-3118627)
[»] chr6 (2 HSPs)
chr6 (94-204)||(289328-289439)
chr6 (96-229)||(3914031-3914165)


Alignment Details
Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 94 - 229
Target Start/End: Original strand, 34512640 - 34512774
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaagaccacatttgtgttgttgt 193  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| | ||||||||||||||| |||| |||||||||| |||    
T  34512640 attcctttttattcttccacatcaataaaatatttcaccctacaaatatttccggtcattccctaaatttgccgaaaaaa-accagatttgtgttgctgt 34512738  T
Q  194 ttctctttgttcctacttcgctctcttcaatcttct 229  Q
    ||||||||||||||||||||||||||||||||||||    
T  34512739 ttctctttgttcctacttcgctctcttcaatcttct 34512774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 94 - 229
Target Start/End: Original strand, 28163333 - 28163469
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccg--aaaaaagaccacatttgtgttgtt 191  Q
    ||||||||||||||||||| |||||||||||||||||||  || ||||||| |||||||||| |||||||||||  |||||| | || |||||||||  |    
T  28163333 attcctttttattcttccagatcaataaaatatttcacct-acaaatattttcggtcattccctgaatttgccggaaaaaaaaatcagatttgtgttact 28163431  T
Q  192 gtttctctttgttcctacttcgctctcttcaatcttct 229  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28163432 gtttctctttgttcctacttcgctctcttcaatcttct 28163469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 94 - 229
Target Start/End: Complemental strand, 44452771 - 44452634
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgc--cgaaaaaagaccacatttgtgttgtt 191  Q
    |||| |||||||||||||| ||| |||||||||||||||| || || |||| |||||||||| |||||||||   | ||||| |||| || ||||||  |    
T  44452771 attcttttttattcttccagatccataaaatatttcaccctacaaacattttcggtcattccctgaatttgctggggaaaaaaaccagatatgtgttact 44452672  T
Q  192 gtttctctttgttcctacttcgctctcttcaatcttct 229  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  44452671 gtttctctttgttactacttcgctctcttcaatcttct 44452634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 94 - 229
Target Start/End: Complemental strand, 8833397 - 8833262
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaagaccacatttgtgttgttgt 193  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||| ||| ||||| ||||||||||||||||| |||| |||||||||| | |    
T  8833397 attcctttttattcttccacatcaataaaatatttcaccctacaaatatttctggtaattccctgaatttgccgaaaaaaaaccagatttgtgttgctat 8833298  T
Q  194 ttctctttgttcctacttcgctctcttcaatcttct 229  Q
    |||||||||||||||||| |||||||||||||||||    
T  8833297 ttctctttgttcctactttgctctcttcaatcttct 8833262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 94 - 229
Target Start/End: Complemental strand, 8082491 - 8082356
Alignment:
Q  94 attcctttt-tattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaagaccacatttgtgttgttg 192  Q
    ||||||||| ||||||||||||||||||||||||||||||| || |||| || |||||||||| ||||||||||| ||||| |||| |||||||||| ||    
T  8082491 attccttttgtattcttccacatcaataaaatatttcaccctacaaatactttcggtcattccctgaatttgccggaaaaa-accagatttgtgttgctg 8082393  T
Q  193 tttctctttgttcctacttcgctctcttcaatcttct 229  Q
    |||||||||||||||||||| |||| |||||||||||    
T  8082392 tttctctttgttcctacttctctctattcaatcttct 8082356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 94 - 229
Target Start/End: Complemental strand, 38595187 - 38595051
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaaga-ccacatttgtgttgttg 192  Q
    |||||||||||||||||||  ||||||||||||||||||| || ||||||||| |||||||| ||||||||||||||||| | ||| | || ||||  ||    
T  38595187 attcctttttattcttccagttcaataaaatatttcaccctacaaatatttcctgtcattccctgaatttgccgaaaaaaaacccagacttatgttactg 38595088  T
Q  193 tttctctttgttcctacttcgctctcttcaatcttct 229  Q
    |||||||||||| ||||||||||||||||||||||||    
T  38595087 tttctctttgttactacttcgctctcttcaatcttct 38595051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 94 - 229
Target Start/End: Complemental strand, 37108364 - 37108228
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgcc-gaaaaaagaccacatttgtgttgttg 192  Q
    |||| |||||||||||||| ||| |||||||||||||||| || |||||||||||||||||| |||||||||| |  |||| |||| || ||||||  ||    
T  37108364 attcttttttattcttccagatccataaaatatttcaccctacaaatatttccggtcattccctgaatttgccggggaaaaaaccagatatgtgttactg 37108265  T
Q  193 tttctctttgttcctacttcgctctcttcaatcttct 229  Q
    |||||||||||| ||||||||||||||||||||||||    
T  37108264 tttctctttgttactacttcgctctcttcaatcttct 37108228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 94 - 229
Target Start/End: Complemental strand, 1066367 - 1066230
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgcc--gaaaaaagaccacatttgtgttgtt 191  Q
    |||| |||||||||||||| ||| |||||||||||||||| || |||||||||||||| ||| ||||||||||  | ||||| |||| || ||||||  |    
T  1066367 attcttttttattcttccagatccataaaatatttcaccctacaaatatttccggtcactccctgaatttgccagggaaaaaaaccagatatgtgttact 1066268  T
Q  192 gtttctctttgttcctacttcgctctcttcaatcttct 229  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  1066267 gtttctctttgttactacttcgctctcttcaatcttct 1066230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 40304279 - 40304201
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaa 173  Q
    ||||||||||||||||| | ||| |||||||||||||||| || |||||||| || |||||| ||||||||||| |||||    
T  40304279 attcctttttattcttcaagatccataaaatatttcaccctacaaatatttctgg-cattccctgaatttgccggaaaaa 40304201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 103 - 229
Target Start/End: Original strand, 44894032 - 44894157
Alignment:
Q  103 tattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaagaccacatttgtgttgttgtttctctttg 202  Q
    ||||||||||||||||||||||||||||||| || ||||||| |||||||||| ||||||||||||||||| |||| |||||||||| ||||||||||||    
T  44894032 tattcttccacatcaataaaatatttcaccctacaaatattttcggtcattccctgaatttgccgaaaaaa-accagatttgtgttgctgtttctctttg 44894130  T
Q  203 ttcctacttcgctctcttcaatcttct 229  Q
    |||||||||||||||||||||||||||    
T  44894131 ttcctacttcgctctcttcaatcttct 44894157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 94 - 229
Target Start/End: Complemental strand, 32244363 - 32244226
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgcc--gaaaaaagaccacatttgtgttgtt 191  Q
    |||| |||||||||||||| ||| |||||||||||||||| || |||||||| ||||||||| ||||||||||  | |||||  ||| || ||||||  |    
T  32244363 attcttttttattcttccagatccataaaatatttcaccctacaaatatttctggtcattccctgaatttgccggggaaaaaacccagatatgtgttact 32244264  T
Q  192 gtttctctttgttcctacttcgctctcttcaatcttct 229  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  32244263 gtttctctttgttactacttcgctctcttcaatcttct 32244226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 94 - 216
Target Start/End: Complemental strand, 3866357 - 3866233
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgcc--gaaaaaagaccacatttgtgttgtt 191  Q
    |||| |||||||||||||| ||  |||||| ||||||||| || |||||||||||||||||| ||||||||||  | ||||| |||| || ||||||  |    
T  3866357 attcttttttattcttccagatacataaaacatttcaccctacaaatatttccggtcattccctgaatttgccagggaaaaaaaccagatatgtgttact 3866258  T
Q  192 gtttctctttgttcctacttcgctc 216  Q
    ||||||||||||| |||||||||||    
T  3866257 gtttctctttgttactacttcgctc 3866233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 6243801 - 6243866
Alignment:
Q  98 ctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaattt 163  Q
    ||||||||||||||| ||| |||||||||||||||| || |||||||| ||||||||| |||||||    
T  6243801 ctttttattcttccagatccataaaatatttcaccctacaaatatttctggtcattccctgaattt 6243866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 44893965 - 44894003
Alignment:
Q  94 attcctttt-tattcttccacatcaataaaatatttcac 131  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  44893965 attccttttgtattcttccacatcaataaaatatttcac 44894003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 94 - 236
Target Start/End: Complemental strand, 37812947 - 37812806
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaagaccacatttgtgttgttgt 193  Q
    ||||||||||||||||||| |||||||||||||||||||| || ||||||||| |||||||| ||||||||||| ||||| |||| |||||||||  |||    
T  37812947 attcctttttattcttccagatcaataaaatatttcaccctacaaatatttcctgtcattccctgaatttgccggaaaaa-accagatttgtgttactgt 37812849  T
Q  194 ttctctttgttcctacttcgctctcttcaatcttctctgctcc 236  Q
    ||||||||||| |||||||||||||||||||||||| ||||||    
T  37812848 ttctctttgttactacttcgctctcttcaatcttctttgctcc 37812806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 94 - 237
Target Start/End: Complemental strand, 19333151 - 19333005
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccg---aaaaaagaccacatttgtgttgt 190  Q
    |||||||||||||||||||  ||||||||||||||||||| |  ||||||||| ||||||||||||||||||||   |||||| |||| |||||||||      
T  19333151 attcctttttattcttccagttcaataaaatatttcaccctaaaaatatttcctgtcattccttgaatttgccggaaaaaaaaaaccagatttgtgttac 19333052  T
Q  191 tgtttctctttgttcctacttcgctctcttcaatcttctctgctcct 237  Q
    |||||||||||||| ||||||| |||||||||||||||| |||||||    
T  19333051 tgtttctctttgttactacttctctctcttcaatcttctttgctcct 19333005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 94 - 229
Target Start/End: Original strand, 40272788 - 40272924
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgcc-gaaaaaagaccacatttgtgttgttg 192  Q
    |||| |||||||||||||| ||| || ||||||||||||| || |||||||| |||||||||||||||||||| | |||||  ||| || |||||| |||    
T  40272788 attcttttttattcttccagatccatcaaatatttcaccctacaaatatttctggtcattccttgaatttgccgggaaaaaacccagatatgtgttattg 40272887  T
Q  193 tttctctttgttcctacttcgctctcttcaatcttct 229  Q
    |||||||||||| ||||||||||||||||||||||||    
T  40272888 tttctctttgttactacttcgctctcttcaatcttct 40272924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 229
Target Start/End: Complemental strand, 43210587 - 43210453
Alignment:
Q  98 ctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccg---aaaaaagaccacatttgtgttgttgtt 194  Q
    ||||||||||||||| ||  |||||||||||||||  || ||||||| |||||||||  ||||||| |||   || |||   |  ||||||||| |||||    
T  43210587 ctttttattcttccagattcataaaatatttcaccatacaaatattttcggtcattcactgaatttcccggataagaaaactctgatttgtgttattgtt 43210488  T
Q  195 tctctttgttcctacttcgctctcttcaatcttct 229  Q
    |||||||||| ||||||||||||||||||||||||    
T  43210487 tctctttgttactacttcgctctcttcaatcttct 43210453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 98 - 229
Target Start/End: Complemental strand, 52010542 - 52010412
Alignment:
Q  98 ctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaagaccacatttgtgttgttgtttct 197  Q
    ||||||||||||||| |||||||||||||||||||| || |||||||||  ||||||| ||||||||||| ||||| |||| |||||||||  |||||||    
T  52010542 ctttttattcttccaaatcaataaaatatttcaccctacaaatatttccaatcattccctgaatttgccggaaaaa-accagatttgtgttactgtttct 52010444  T
Q  198 ctttgttcctacttcgctctcttcaatcttct 229  Q
    ||||||||||||||||||||||||||||||||    
T  52010443 ctttgttcctacttcgctctcttcaatcttct 52010412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 94 - 229
Target Start/End: Complemental strand, 11397724 - 11397584
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccg-----aaaaaagaccacatttgtgtt 188  Q
    |||||||||||||||||||  ||||||||||||||||||| || ||||||||| |||||||| |||||||||||     |||||| |||| |||||||||    
T  11397724 attcctttttattcttccaattcaataaaatatttcaccctacaaatatttcctgtcattccctgaatttgccggaaaaaaaaaaaaccagatttgtgtt 11397625  T
Q  189 gttgtttctctttgttcctacttcgctctcttcaatcttct 229  Q
      |||||||||||||| ||||||||||||||||||||||||    
T  11397624 actgtttctctttgttactacttcgctctcttcaatcttct 11397584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 94 - 229
Target Start/End: Complemental strand, 25352639 - 25352505
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaagaccacatttgtgttgttgt 193  Q
    ||||||||||||||||| | |||||||||||||||||||| || |||||||||||||||||| | |||||| || ||||| | || |||||||||  |||    
T  25352639 attcctttttattcttctagatcaataaaatatttcaccctacaaatatttccggtcattccctaaatttgtcggaaaaa-atcagatttgtgttactgt 25352541  T
Q  194 ttctctttgttcctacttcgctctcttcaatcttct 229  Q
    |||||||| |||||||||  ||||||||||||||||    
T  25352540 ttctctttattcctactttactctcttcaatcttct 25352505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 94 - 229
Target Start/End: Complemental strand, 52882274 - 52882139
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaagaccacatttgtgttgttgt 193  Q
    ||||||||||||||||| | ||  ||||||||||||||||  | ||||||| |||||||||| ||||||||| | ||||| | || |||||||||  |||    
T  52882274 attcctttttattcttcgagattcataaaatatttcaccctgcaaatattttcggtcattccctgaatttgcaggaaaaaaatcagatttgtgttactgt 52882175  T
Q  194 ttctctttgttcctacttcgctctcttcaatcttct 229  Q
    ||||||||||| |||||| |||||||||||||||||    
T  52882174 ttctctttgttactactttgctctcttcaatcttct 52882139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 94 - 229
Target Start/End: Complemental strand, 49768373 - 49768236
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgc--cgaaaaaagaccacatttgtgttgtt 191  Q
    |||| |||||||||||| | ||| ||||||||||||||||  | |||||||||||||||||| |||||||||   | ||||| |||| || ||||||  |    
T  49768373 attcttttttattcttctagatccataaaatatttcaccctgcaaatatttccggtcattccctgaatttgctggggaaaaaaaccaaatatgtgttact 49768274  T
Q  192 gtttctctttgttcctacttcgctctcttcaatcttct 229  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  49768273 gtttctctttgttactacttcgctctcttcaatcttct 49768236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 99 - 225
Target Start/End: Original strand, 27551126 - 27551254
Alignment:
Q  99 tttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgcc--gaaaaaagaccacatttgtgttgttgtttc 196  Q
    |||||||||||||| ||| |||||||||||||||| || ||||||||| |||||||| ||||||||||  | ||||| | || || |||||| |||||||    
T  27551126 tttttattcttccagatccataaaatatttcaccctacaaatatttccagtcattccctgaatttgcctgggaaaaaaagcagatatgtgttattgtttc 27551225  T
Q  197 tctttgttcctacttcgctctcttcaatc 225  Q
    |||||||| ||||||| ||||||||||||    
T  27551226 tctttgttactacttcactctcttcaatc 27551254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 94 - 229
Target Start/End: Complemental strand, 31991771 - 31991635
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccga-aaaaagaccacatttgtgttgttg 192  Q
    ||||||| ||||||||||| ||| |||||||||||||||| || |||||||||||||||| | |||||||||||| ||||| | || || |||||| |||    
T  31991771 attccttattattcttccagatccataaaatatttcaccctacaaatatttccggtcatttcctgaatttgccgagaaaaaaaacaaatatgtgttattg 31991672  T
Q  193 tttctctttgttcctacttcgctctcttcaatcttct 229  Q
    |||||||||||| ||||||||||||||||||||||||    
T  31991671 tttctctttgttactacttcgctctcttcaatcttct 31991635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 94 - 229
Target Start/End: Original strand, 44556246 - 44556383
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgcc--gaaaaaagaccacatttgtgttgtt 191  Q
    |||| |||||||||||| | ||| |||||||||||||||| || |||||||||||||||||| ||||||||||  | |||||  ||| || |||||| ||    
T  44556246 attcttttttattcttctagatccataaaatatttcaccctacaaatatttccggtcattccctgaatttgccggggaaaaaacccagatatgtgttatt 44556345  T
Q  192 gtttctctttgttcctacttcgctctcttcaatcttct 229  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  44556346 gtttctctttgttactacttcgctctcttcaatcttct 44556383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 94 - 228
Target Start/End: Original strand, 33475798 - 33475934
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgcc--gaaaaaagaccacatttgtgttgtt 191  Q
    |||| |||||||||||||| ||| |||||||||||||||| || |||||||| ||||||||| ||||||||||  | ||||   ||| || ||||||  |    
T  33475798 attcttttttattcttccagatccataaaatatttcaccctacaaatatttctggtcattccctgaatttgccggggaaaacacccagatatgtgttact 33475897  T
Q  192 gtttctctttgttcctacttcgctctcttcaatcttc 228  Q
    ||||||||||||| |||||||||||||||||||||||    
T  33475898 gtttctctttgttactacttcgctctcttcaatcttc 33475934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 94 - 235
Target Start/End: Complemental strand, 52701855 - 52701707
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccg-----aaaaaagaccacatttgtgtt 188  Q
    |||||||||||||||||||  ||||||||||||||||||| || ||||||||| |||||||| | |||||||||     |||||| |||| |||| ||||    
T  52701855 attcctttttattcttccagttcaataaaatatttcaccctacaaatatttcctgtcattccctaaatttgccggaaaaaaaaaaaaccagatttatgtt 52701756  T
Q  189 gttgtttctctttgttcctacttcgctctc--ttcaatcttctctgctc 235  Q
      |||||||||||||| |||||||||||||  ||||||||||| |||||    
T  52701755 actgtttctctttgttactacttcgctctcttttcaatcttctttgctc 52701707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 229
Target Start/End: Original strand, 8575508 - 8575643
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaa-aaaagaccacatttgtgttgttg 192  Q
    ||||||||||||||||| | ||| |||||||||||| ||| || |||||||||||||||||  ||||||| | |   |||| |||| || |||||| |||    
T  8575508 attcctttttattcttctagatccataaaatatttc-ccctacaaatatttccggtcattcactgaattttctgggcaaaaaaccaaatatgtgttattg 8575606  T
Q  193 tttctctttgttcctacttcgctctcttcaatcttct 229  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  8575607 tttctctttgttactatttcgctctcttcaatcttct 8575643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 229
Target Start/End: Complemental strand, 41927897 - 41927784
Alignment:
Q  120 aaaatatttcaccccaccaatatttccggtcattccttgaatttgccg----aaaaaagaccacatttgtgttgttgtttctctttgttcctacttcgct 215  Q
    |||||||||||||| || ||||||||| | |||||| | |||||| ||    |||||| | || || ||||||  |||||||||||||| ||||||||||    
T  41927897 aaaatatttcaccctacaaatatttccagccattccctaaatttgtcgggggaaaaaaaagcagatatgtgttactgtttctctttgttactacttcgct 41927798  T
Q  216 ctcttcaatcttct 229  Q
    ||||||||||||||    
T  41927797 ctcttcaatcttct 41927784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 94 - 229
Target Start/End: Original strand, 32318552 - 32318689
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgcc--gaaaaaagaccacatttgtgttgtt 191  Q
    |||| |||||||||||||| ||| |||||||||||||||| || ||||||| |||||||||| ||||||||||  | ||||| |||| || ||||||  |    
T  32318552 attcttttttattcttccagatccataaaatatttcaccctacaaatattttcggtcattccctgaatttgccagggaaaaaaaccagatatgtgttaat 32318651  T
Q  192 gtttctctttgttcctacttcgctctcttcaatcttct 229  Q
    ||||||||||||| |||||| ||||| |||||||||||    
T  32318652 gtttctctttgttactactttgctcttttcaatcttct 32318689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 3118627 - 3118524
Alignment:
Q  122 aatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaagaccacatttgtgttgttgtttctctttgttcctacttcgctctcttc 221  Q
    ||||||||| || || |||||||||||||||||||||||||||||| ||||| |||| || |||||     |||||||||||| |||||||||||||||     
T  3118627 aatatttcatcctacaaatatttccggtcattccttgaatttgccggaaaaaaaccagatatgtgtc----tttctctttgttactacttcgctctcttt 3118532  T
Q  222 aatcttct 229  Q
    ||||||||    
T  3118531 aatcttct 3118524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 94 - 204
Target Start/End: Original strand, 289328 - 289439
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttg-ccgaaaaaagaccacatttgtgttgttg 192  Q
    |||| ||||||||||| || ||| |||||||||||||||| || |||||||| ||||||||| |||||||| | | ||||| |||| || ||||||  |     
T  289328 attcttttttattctttcagatccataaaatatttcaccctacaaatatttctggtcattccctgaatttgtcaggaaaaaaaccaaatatgtgttactc 289427  T
Q  193 tttctctttgtt 204  Q
    ||||||||||||    
T  289428 tttctctttgtt 289439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 3914031 - 3914165
Alignment:
Q  96 tcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaa-gaccacatttgtgttgttgtt 194  Q
    ||||||||||||||| | ||| ||| |||||||||||| || |||||||  ||||||||| | ||||||  |||||||   ||  || ||||||  ||||    
T  3914031 tcctttttattcttcaagatccatagaatatttcaccctacaaatatttatggtcattccctaaatttgttgaaaaaacccccggatctgtgttactgtt 3914130  T
Q  195 tctctttgttcctacttcgctctcttcaatcttct 229  Q
    ||||| | || ||||||||||||||||||| ||||    
T  3914131 tctctctattactacttcgctctcttcaatattct 3914165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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