View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12738_high_23 (Length: 214)

Name: NF12738_high_23
Description: NF12738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12738_high_23
NF12738_high_23
[»] chr4 (3 HSPs)
chr4 (94-199)||(34512640-34512744)
chr4 (94-199)||(28163333-28163439)
chr4 (94-165)||(44452700-44452771)
[»] chr7 (6 HSPs)
chr7 (94-199)||(8833292-8833397)
chr7 (94-199)||(8082386-8082491)
chr7 (94-173)||(38595108-38595187)
chr7 (94-167)||(37108291-37108364)
chr7 (94-166)||(1066295-1066367)
chr7 (94-173)||(40304201-40304279)
[»] chr8 (5 HSPs)
chr8 (103-199)||(44894032-44894127)
chr8 (94-167)||(32244290-32244363)
chr8 (98-163)||(6243801-6243866)
chr8 (94-166)||(3866285-3866357)
chr8 (94-131)||(44893965-44894003)
[»] chr5 (4 HSPs)
chr5 (94-199)||(37812843-37812947)
chr5 (94-199)||(19333043-19333151)
chr5 (94-199)||(40272788-40272894)
chr5 (98-163)||(43210522-43210587)
[»] chr1 (6 HSPs)
chr1 (98-199)||(52010442-52010542)
chr1 (94-173)||(11397645-11397724)
chr1 (94-199)||(25352535-25352639)
chr1 (99-166)||(27551126-27551193)
chr1 (94-199)||(52882169-52882274)
chr1 (94-165)||(49768302-49768373)
[»] chr3 (5 HSPs)
chr3 (94-199)||(31991665-31991771)
chr3 (94-173)||(52701776-52701855)
chr3 (94-167)||(33475798-33475871)
chr3 (94-167)||(44556246-44556319)
chr3 (94-163)||(8575508-8575576)
[»] chr2 (2 HSPs)
chr2 (94-166)||(32318552-32318624)
chr2 (122-187)||(3118562-3118627)
[»] chr6 (2 HSPs)
chr6 (94-164)||(289328-289398)
chr6 (96-173)||(3914031-3914108)


Alignment Details
Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 94 - 199
Target Start/End: Original strand, 34512640 - 34512744
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaagaccacatttgtgttgttgt 193  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| | ||||||||||||||| |||| |||||||||| |||    
T  34512640 attcctttttattcttccacatcaataaaatatttcaccctacaaatatttccggtcattccctaaatttgccgaaaaaa-accagatttgtgttgctgt 34512738  T
Q  194 ttctct 199  Q
    ||||||    
T  34512739 ttctct 34512744  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 94 - 199
Target Start/End: Original strand, 28163333 - 28163439
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccg--aaaaaagaccacatttgtgttgtt 191  Q
    ||||||||||||||||||| ||||||||||||||||| || || ||||||| |||||||||| |||||||||||  |||||| | || |||||||||  |    
T  28163333 attcctttttattcttccagatcaataaaatatttca-cctacaaatattttcggtcattccctgaatttgccggaaaaaaaaatcagatttgtgttact 28163431  T
Q  192 gtttctct 199  Q
    ||||||||    
T  28163432 gtttctct 28163439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 44452771 - 44452700
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgc 165  Q
    |||| |||||||||||||| ||| |||||||||||||||| || || |||| |||||||||| |||||||||    
T  44452771 attcttttttattcttccagatccataaaatatttcaccctacaaacattttcggtcattccctgaatttgc 44452700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 94 - 199
Target Start/End: Complemental strand, 8833397 - 8833292
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaagaccacatttgtgttgttgt 193  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||| ||| ||||| ||||||||||||||||| |||| |||||||||| | |    
T  8833397 attcctttttattcttccacatcaataaaatatttcaccctacaaatatttctggtaattccctgaatttgccgaaaaaaaaccagatttgtgttgctat 8833298  T
Q  194 ttctct 199  Q
    ||||||    
T  8833297 ttctct 8833292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 94 - 199
Target Start/End: Complemental strand, 8082491 - 8082386
Alignment:
Q  94 attcctttt-tattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaagaccacatttgtgttgttg 192  Q
    ||||||||| ||||||||||||||||||||||||||||||| || |||| || |||||||||| ||||||||||| ||||| |||| |||||||||| ||    
T  8082491 attccttttgtattcttccacatcaataaaatatttcaccctacaaatactttcggtcattccctgaatttgccggaaaaa-accagatttgtgttgctg 8082393  T
Q  193 tttctct 199  Q
    |||||||    
T  8082392 tttctct 8082386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 38595187 - 38595108
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaa 173  Q
    |||||||||||||||||||  ||||||||||||||||||| || ||||||||| |||||||| |||||||||||||||||    
T  38595187 attcctttttattcttccagttcaataaaatatttcaccctacaaatatttcctgtcattccctgaatttgccgaaaaaa 38595108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 37108364 - 37108291
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccg 167  Q
    |||| |||||||||||||| ||| |||||||||||||||| || |||||||||||||||||| |||||||||||    
T  37108364 attcttttttattcttccagatccataaaatatttcaccctacaaatatttccggtcattccctgaatttgccg 37108291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 1066367 - 1066295
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgcc 166  Q
    |||| |||||||||||||| ||| |||||||||||||||| || |||||||||||||| ||| ||||||||||    
T  1066367 attcttttttattcttccagatccataaaatatttcaccctacaaatatttccggtcactccctgaatttgcc 1066295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 40304279 - 40304201
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaa 173  Q
    ||||||||||||||||| | ||| |||||||||||||||| || |||||||| || |||||| ||||||||||| |||||    
T  40304279 attcctttttattcttcaagatccataaaatatttcaccctacaaatatttctgg-cattccctgaatttgccggaaaaa 40304201  T

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Target: chr8 (Bit Score: 65; Significance: 9e-29; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 44894032 - 44894127
Alignment:
Q  103 tattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaagaccacatttgtgttgttgtttctct 199  Q
    ||||||||||||||||||||||||||||||| || ||||||| |||||||||| ||||||||||||||||| |||| |||||||||| |||||||||    
T  44894032 tattcttccacatcaataaaatatttcaccctacaaatattttcggtcattccctgaatttgccgaaaaaa-accagatttgtgttgctgtttctct 44894127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 32244363 - 32244290
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccg 167  Q
    |||| |||||||||||||| ||| |||||||||||||||| || |||||||| ||||||||| |||||||||||    
T  32244363 attcttttttattcttccagatccataaaatatttcaccctacaaatatttctggtcattccctgaatttgccg 32244290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 6243801 - 6243866
Alignment:
Q  98 ctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaattt 163  Q
    ||||||||||||||| ||| |||||||||||||||| || |||||||| ||||||||| |||||||    
T  6243801 ctttttattcttccagatccataaaatatttcaccctacaaatatttctggtcattccctgaattt 6243866  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 3866357 - 3866285
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgcc 166  Q
    |||| |||||||||||||| ||  |||||| ||||||||| || |||||||||||||||||| ||||||||||    
T  3866357 attcttttttattcttccagatacataaaacatttcaccctacaaatatttccggtcattccctgaatttgcc 3866285  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 44893965 - 44894003
Alignment:
Q  94 attcctttt-tattcttccacatcaataaaatatttcac 131  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  44893965 attccttttgtattcttccacatcaataaaatatttcac 44894003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 94 - 199
Target Start/End: Complemental strand, 37812947 - 37812843
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaagaccacatttgtgttgttgt 193  Q
    ||||||||||||||||||| |||||||||||||||||||| || ||||||||| |||||||| ||||||||||| ||||| |||| |||||||||  |||    
T  37812947 attcctttttattcttccagatcaataaaatatttcaccctacaaatatttcctgtcattccctgaatttgccggaaaaa-accagatttgtgttactgt 37812849  T
Q  194 ttctct 199  Q
    ||||||    
T  37812848 ttctct 37812843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 94 - 199
Target Start/End: Complemental strand, 19333151 - 19333043
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccg---aaaaaagaccacatttgtgttgt 190  Q
    |||||||||||||||||||  ||||||||||||||||||| |  ||||||||| ||||||||||||||||||||   |||||| |||| |||||||||      
T  19333151 attcctttttattcttccagttcaataaaatatttcaccctaaaaatatttcctgtcattccttgaatttgccggaaaaaaaaaaccagatttgtgttac 19333052  T
Q  191 tgtttctct 199  Q
    |||||||||    
T  19333051 tgtttctct 19333043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 94 - 199
Target Start/End: Original strand, 40272788 - 40272894
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgcc-gaaaaaagaccacatttgtgttgttg 192  Q
    |||| |||||||||||||| ||| || ||||||||||||| || |||||||| |||||||||||||||||||| | |||||  ||| || |||||| |||    
T  40272788 attcttttttattcttccagatccatcaaatatttcaccctacaaatatttctggtcattccttgaatttgccgggaaaaaacccagatatgtgttattg 40272887  T
Q  193 tttctct 199  Q
    |||||||    
T  40272888 tttctct 40272894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 43210587 - 43210522
Alignment:
Q  98 ctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaattt 163  Q
    ||||||||||||||| ||  |||||||||||||||  || ||||||| |||||||||  |||||||    
T  43210587 ctttttattcttccagattcataaaatatttcaccatacaaatattttcggtcattcactgaattt 43210522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 98 - 199
Target Start/End: Complemental strand, 52010542 - 52010442
Alignment:
Q  98 ctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaagaccacatttgtgttgttgtttct 197  Q
    ||||||||||||||| |||||||||||||||||||| || |||||||||  ||||||| ||||||||||| ||||| |||| |||||||||  |||||||    
T  52010542 ctttttattcttccaaatcaataaaatatttcaccctacaaatatttccaatcattccctgaatttgccggaaaaa-accagatttgtgttactgtttct 52010444  T
Q  198 ct 199  Q
    ||    
T  52010443 ct 52010442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 11397724 - 11397645
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaa 173  Q
    |||||||||||||||||||  ||||||||||||||||||| || ||||||||| |||||||| ||||||||||| |||||    
T  11397724 attcctttttattcttccaattcaataaaatatttcaccctacaaatatttcctgtcattccctgaatttgccggaaaaa 11397645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 94 - 199
Target Start/End: Complemental strand, 25352639 - 25352535
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaagaccacatttgtgttgttgt 193  Q
    ||||||||||||||||| | |||||||||||||||||||| || |||||||||||||||||| | |||||| || ||||| | || |||||||||  |||    
T  25352639 attcctttttattcttctagatcaataaaatatttcaccctacaaatatttccggtcattccctaaatttgtcggaaaaa-atcagatttgtgttactgt 25352541  T
Q  194 ttctct 199  Q
    ||||||    
T  25352540 ttctct 25352535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 27551126 - 27551193
Alignment:
Q  99 tttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgcc 166  Q
    |||||||||||||| ||| |||||||||||||||| || ||||||||| |||||||| ||||||||||    
T  27551126 tttttattcttccagatccataaaatatttcaccctacaaatatttccagtcattccctgaatttgcc 27551193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 94 - 199
Target Start/End: Complemental strand, 52882274 - 52882169
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaagaccacatttgtgttgttgt 193  Q
    ||||||||||||||||| | ||  ||||||||||||||||  | ||||||| |||||||||| ||||||||| | ||||| | || |||||||||  |||    
T  52882274 attcctttttattcttcgagattcataaaatatttcaccctgcaaatattttcggtcattccctgaatttgcaggaaaaaaatcagatttgtgttactgt 52882175  T
Q  194 ttctct 199  Q
    ||||||    
T  52882174 ttctct 52882169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 49768373 - 49768302
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgc 165  Q
    |||| |||||||||||| | ||| ||||||||||||||||  | |||||||||||||||||| |||||||||    
T  49768373 attcttttttattcttctagatccataaaatatttcaccctgcaaatatttccggtcattccctgaatttgc 49768302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 94 - 199
Target Start/End: Complemental strand, 31991771 - 31991665
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccga-aaaaagaccacatttgtgttgttg 192  Q
    ||||||| ||||||||||| ||| |||||||||||||||| || |||||||||||||||| | |||||||||||| ||||| | || || |||||| |||    
T  31991771 attccttattattcttccagatccataaaatatttcaccctacaaatatttccggtcatttcctgaatttgccgagaaaaaaaacaaatatgtgttattg 31991672  T
Q  193 tttctct 199  Q
    |||||||    
T  31991671 tttctct 31991665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 52701855 - 52701776
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaa 173  Q
    |||||||||||||||||||  ||||||||||||||||||| || ||||||||| |||||||| | ||||||||| |||||    
T  52701855 attcctttttattcttccagttcaataaaatatttcaccctacaaatatttcctgtcattccctaaatttgccggaaaaa 52701776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 33475798 - 33475871
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccg 167  Q
    |||| |||||||||||||| ||| |||||||||||||||| || |||||||| ||||||||| |||||||||||    
T  33475798 attcttttttattcttccagatccataaaatatttcaccctacaaatatttctggtcattccctgaatttgccg 33475871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 44556246 - 44556319
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccg 167  Q
    |||| |||||||||||| | ||| |||||||||||||||| || |||||||||||||||||| |||||||||||    
T  44556246 attcttttttattcttctagatccataaaatatttcaccctacaaatatttccggtcattccctgaatttgccg 44556319  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 8575508 - 8575576
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaattt 163  Q
    ||||||||||||||||| | ||| |||||||||||| ||| || |||||||||||||||||  |||||||    
T  8575508 attcctttttattcttctagatccataaaatatttc-ccctacaaatatttccggtcattcactgaattt 8575576  T

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Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 32318552 - 32318624
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgcc 166  Q
    |||| |||||||||||||| ||| |||||||||||||||| || ||||||| |||||||||| ||||||||||    
T  32318552 attcttttttattcttccagatccataaaatatttcaccctacaaatattttcggtcattccctgaatttgcc 32318624  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 3118627 - 3118562
Alignment:
Q  122 aatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaagaccacatttgtgt 187  Q
    ||||||||| || || |||||||||||||||||||||||||||||| ||||| |||| || |||||    
T  3118627 aatatttcatcctacaaatatttccggtcattccttgaatttgccggaaaaaaaccagatatgtgt 3118562  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 164
Target Start/End: Original strand, 289328 - 289398
Alignment:
Q  94 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttg 164  Q
    |||| ||||||||||| || ||| |||||||||||||||| || |||||||| ||||||||| ||||||||    
T  289328 attcttttttattctttcagatccataaaatatttcaccctacaaatatttctggtcattccctgaatttg 289398  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 3914031 - 3914108
Alignment:
Q  96 tcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaa 173  Q
    ||||||||||||||| | ||| ||| |||||||||||| || |||||||  ||||||||| | ||||||  |||||||    
T  3914031 tcctttttattcttcaagatccatagaatatttcaccctacaaatatttatggtcattccctaaatttgttgaaaaaa 3914108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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