View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12738_high_4 (Length: 382)
Name: NF12738_high_4
Description: NF12738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12738_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 21548924 - 21549283
Alignment:
| Q |
1 |
aagattcatatgaggatgaggaggataagcagcaattcatgaaacaagattcatctgtggaggaggaggagaaacggctgaaatcggaaccgaaaccgga |
100 |
Q |
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| T |
21548924 |
aagattcatatgaggatgaggaggataagcagaaattcatgaaataagattcatctgtggaggaggaggagaaacggctgaaatcggaaccgaaaccgga |
21549023 |
T |
|
| Q |
101 |
tccagatgattctgagtatagtgaggaagacgaggataacttgtctgtgcatgacaatgacagttttccattttggtataagcgtcgtgatggtactttg |
200 |
Q |
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| T |
21549024 |
tccagatgattctgagtatagtgaggaagacgaggataacttgtctgtgcatgacaatgacagttttccattttggtataagcgtcgtgatggtactttg |
21549123 |
T |
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| Q |
201 |
tatacgaataaggcttggaaggatcgtgaggctaaaattcttgactataaaaatcgctctagcaaactaagtgtaggcatctatcaatttcaatttcatg |
300 |
Q |
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| T |
21549124 |
tatacaaataaggcttggaaggatcgtgaggctaaaattcttgactataaaaatcgctctagcaaactaagtgtaggcatctatcaatttcaatttcatg |
21549223 |
T |
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| Q |
301 |
ttgtttgtctgtttcacttatctcttaattttgattgattctggacaatacaaagcaggt |
360 |
Q |
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| T |
21549224 |
ttgtttgtttgtttcacttatctcttaattttgattgattcaggacaatacaaagcaggt |
21549283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 181
Target Start/End: Original strand, 44313713 - 44313743
Alignment:
| Q |
151 |
atgacaatgacagttttccattttggtataa |
181 |
Q |
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| T |
44313713 |
atgacaatgacagttttccattttggtataa |
44313743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 362
Target Start/End: Original strand, 20361467 - 20361504
Alignment:
| Q |
325 |
ttaattttgattgattctggacaatacaaagcaggttt |
362 |
Q |
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| T |
20361467 |
ttaattttgattgattctggacaacacaaaccaggttt |
20361504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 299
Target Start/End: Original strand, 32194627 - 32194659
Alignment:
| Q |
267 |
ctaagtgtaggcatctatcaatttcaatttcat |
299 |
Q |
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| T |
32194627 |
ctaagtgtaggcatctatcaacttcaatttcat |
32194659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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