View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12738_high_9 (Length: 313)

Name: NF12738_high_9
Description: NF12738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12738_high_9
NF12738_high_9
[»] chr4 (11 HSPs)
chr4 (30-303)||(4011896-4012170)
chr4 (152-303)||(4003417-4003568)
chr4 (157-303)||(3952844-3952990)
chr4 (145-303)||(3821681-3821839)
chr4 (167-303)||(4026653-4026789)
chr4 (145-302)||(3812109-3812266)
chr4 (145-303)||(3988306-3988464)
chr4 (145-303)||(3915785-3915946)
chr4 (201-303)||(3926838-3926940)
chr4 (60-109)||(4026853-4026902)
chr4 (156-232)||(4220990-4221066)
[»] chr5 (1 HSPs)
chr5 (145-303)||(13399258-13399416)


Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 30 - 303
Target Start/End: Complemental strand, 4012170 - 4011896
Alignment:
Q  30 agagatatgaatagcatcactttttgataattaagtagtaacatttttt-aattgttgttgtattttgttaatgttatagagatctaagtttttatgaag 128  Q
    |||||||||||||| ||||||||||||| ||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4012170 agagatatgaatagaatcactttttgatgattaagtagtaaattttttttaattgttgttgtattttgttaatgttatagagatctaagtttttatgaag 4012071  T
Q  129 aacctaagnnnnnnngttgttattaaattgaaggctgtagcagaaaaggcaccgtcaaacattgctccccaatcaaagtatgatgcttttgtaagcttta 228  Q
    ||||||||       ||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||    
T  4012070 aacctaagttttttcgttcttattgaattgaaggctgtagcagaaaaggcaccgtcaaacatttctccccaatcaaaggatgatgtttttgtaagcttta 4011971  T
Q  229 ggggtgaggacatccgccatggattattttgccatttggttaaggcttttcctcgaaagcaaataaatgcctttg 303  Q
    | ||||| ||||||||||| ||||| ||| ||||||||||||  |||||||||||||||||||||||||||||||    
T  4011970 gaggtgaagacatccgccacggattttttggccatttggttatcgcttttcctcgaaagcaaataaatgcctttg 4011896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 152 - 303
Target Start/End: Complemental strand, 4003568 - 4003417
Alignment:
Q  152 taaattgaaggctgtagcagaaaaggcaccgtcaaacattgctccccaatcaaagtatgatgcttttgtaagctttaggggtgaggacatccgccatgga 251  Q
    ||||||||||| ||||||||||||||||  |||||||  ||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| || |||    
T  4003568 taaattgaagggtgtagcagaaaaggcaatgtcaaacgatgctccccaattaaagtatgatgtttttgtaagctttaggggcgaggacatccgtcacgga 4003469  T
Q  252 ttattttgccatttggttaaggcttttcctcgaaagcaaataaatgcctttg 303  Q
    ||  || |||||||| |||| ||||||||||| || ||||||||||||||||    
T  4003468 tttcttggccatttgattaaagcttttcctcgtaaacaaataaatgcctttg 4003417  T

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Target: chr4; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 157 - 303
Target Start/End: Original strand, 3952844 - 3952990
Alignment:
Q  157 tgaaggctgtagcagaaaaggcaccgtcaaacattgctccccaatcaaagtatgatgcttttgtaagctttaggggtgaggacatccgccatggattatt 256  Q
    |||||| ||||||||||||| ||  |||||||| | ||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| || ||  |    
T  3952844 tgaagggtgtagcagaaaagacaatgtcaaacaattctcccgaatcaaagtatgatgtttttgtaagctttaggggagaggacatccgccacggctttct 3952943  T
Q  257 ttgccatttggttaaggcttttcctcgaaagcaaataaatgcctttg 303  Q
    | | ||||||| |||||||||||||| ||||||||||||||||||||    
T  3952944 tggtcatttggctaaggcttttcctcaaaagcaaataaatgcctttg 3952990  T

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Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 145 - 303
Target Start/End: Complemental strand, 3821839 - 3821681
Alignment:
Q  145 ttgttattaaattgaaggctgtagcagaaaaggcaccgtcaaacattgctccccaatcaaagtatgatgcttttgtaagctttaggggtgaggacatccg 244  Q
    |||||| ||| ||||||| ||||||||||| || |  | |||||| | |||| |||| ||||||||||| |||||||||||||||||| ||||| |||||    
T  3821839 ttgttaataagttgaagggtgtagcagaaagggaaatgccaaacaatactcctcaattaaagtatgatgtttttgtaagctttaggggcgaggatatccg 3821740  T
Q  245 ccatggattattttgccatttggttaaggcttttcctcgaaagcaaataaatgcctttg 303  Q
    |||  | ||  || |||||||||||||||||||||||||||||||||||||||||||||    
T  3821739 ccacagctttcttagccatttggttaaggcttttcctcgaaagcaaataaatgcctttg 3821681  T

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Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 167 - 303
Target Start/End: Complemental strand, 4026789 - 4026653
Alignment:
Q  167 agcagaaaaggcaccgtcaaacattgctccccaatcaaagtatgatgcttttgtaagctttaggggtgaggacatccgccatggattattttgccatttg 266  Q
    |||||||||||||  ||| |||| |||||| ||| |||||||||||| ||| |||| |||||||||||||||||||||||| || ||  || ||||||||    
T  4026789 agcagaaaaggcaatgtctaacaatgctcctcaaccaaagtatgatgttttcgtaaactttaggggtgaggacatccgccacggctttcttggccatttg 4026690  T
Q  267 gttaaggcttttcctcgaaagcaaataaatgcctttg 303  Q
    | |||||||||| ||||||||||||||||||||||||    
T  4026689 gctaaggctttttctcgaaagcaaataaatgcctttg 4026653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 145 - 302
Target Start/End: Complemental strand, 3812266 - 3812109
Alignment:
Q  145 ttgttattaaattgaaggctgtagcagaaaaggcaccgtcaaacattgctccccaatcaaagtatgatgcttttgtaagctttaggggtgaggacatccg 244  Q
    |||||| ||| ||||||| ||||||||||| || |  | |||||| | |||| |||||||||||||||| |||||||||||||||||| |||||||||||    
T  3812266 ttgttaataagttgaagggtgtagcagaaagggaaatgccaaacaatactcctcaatcaaagtatgatgtttttgtaagctttaggggcgaggacatccg 3812167  T
Q  245 ccatggattattttgccatttggttaaggcttttcctcgaaagcaaataaatgccttt 302  Q
    | |    ||  || ||||||||| | |||||||| |||||||||||||||||||||||    
T  3812166 caagttctttcttagccatttggctgaggctttttctcgaaagcaaataaatgccttt 3812109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 303
Target Start/End: Complemental strand, 3988464 - 3988306
Alignment:
Q  145 ttgttattaaattgaaggctgtagcagaaaaggcaccgtcaaacattgctccccaatcaaagtatgatgcttttgtaagctttaggggtgaggacatccg 244  Q
    |||||| ||| ||||||| ||||| ||||||| ||  ||||| ||  |||||||||||||| ||||||| |||||| |||||||||||  ||||||||||    
T  3988464 ttgttaataagttgaagggtgtaggagaaaagtcaatgtcaaccaacgctccccaatcaaaatatgatgtttttgtgagctttaggggcaaggacatccg 3988365  T
Q  245 ccatggattattttgccatttggttaaggcttttcctcgaaagcaaataaatgcctttg 303  Q
      | || ||  || ||||||||||||||||||||| || |||| ||||||||| |||||    
T  3988364 agacggctttcttggccatttggttaaggcttttcgtcaaaagaaaataaatgtctttg 3988306  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 303
Target Start/End: Original strand, 3915785 - 3915946
Alignment:
Q  145 ttgttattaaattgaaggctgtagcagaaaaggcaccgtcaaacattgctcccc---aatcaaagtatgatgcttttgtaagctttaggggtgaggacat 241  Q
    |||||| ||||||||||| ||| || |||||| ||  |||||||| | |||| |   | ||||||||||||| ||||||||||||||| ||  |||| ||    
T  3915785 ttgttaataaattgaagggtgttgcggaaaagacaatgtcaaacaatactcctcctcattcaaagtatgatgtttttgtaagctttagtggcaaggaaat 3915884  T
Q  242 ccgccatggattattttgccatttggttaaggcttttcctcgaaagcaaataaatgcctttg 303  Q
    |||    || ||  || ||||||||||||||||||||  || ||||||||||||||| ||||    
T  3915885 ccgtagcggctttcttagccatttggttaaggctttttgtcaaaagcaaataaatgcttttg 3915946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 303
Target Start/End: Original strand, 3926838 - 3926940
Alignment:
Q  201 tcaaagtatgatgcttttgtaagctttaggggtgaggacatccgccatggattattttgccatttggttaaggcttttcctcgaaagcaaataaatgcct 300  Q
    ||||||||||||| ||||||||||||||| ||  ||||||| ||     | ||  || ||||||||||||||||||||| || ||||||||||||||| |    
T  3926838 tcaaagtatgatgtttttgtaagctttagtggcaaggacattcgtagcagctttcttagccatttggttaaggcttttcttcaaaagcaaataaatgctt 3926937  T
Q  301 ttg 303  Q
    |||    
T  3926938 ttg 3926940  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 4026902 - 4026853
Alignment:
Q  60 ttaagtagtaacattttttaattgttgttgtattttgttaatgttataga 109  Q
    |||||||||||||||| |||| | ||| ||||||||||||||||||||||    
T  4026902 ttaagtagtaacatttattaaattttgctgtattttgttaatgttataga 4026853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 4221066 - 4220990
Alignment:
Q  156 ttgaaggctgtagcagaaaaggcaccgtcaaacattgctccccaatcaaagtatgatgcttttgtaagctttagggg 232  Q
    ||||||| || ||||||||| |||  |||||||| | ||||  ||||||||| ||||| ||||||||||||||||||    
T  4221066 ttgaagggtgcagcagaaaaagcaatgtcaaacaatactcctaaatcaaagtttgatgtttttgtaagctttagggg 4220990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 145 - 303
Target Start/End: Complemental strand, 13399416 - 13399258
Alignment:
Q  145 ttgttattaaattgaaggctgtagcagaaaaggcaccgtcaaacattgctccccaatcaaagtatgatgcttttgtaagctttaggggtgaggacatccg 244  Q
    |||||| ||| ||||||| | |||| ||||| |||  |||||  | ||||||||||||||  || |||| |||||||||||||||||||||||||||||     
T  13399416 ttgttaataagttgaagggtatagctgaaaaagcagtgtcaagaaatgctccccaatcaatatacgatgtttttgtaagctttaggggtgaggacatcca 13399317  T
Q  245 ccatggattattttgccatttggttaaggcttttcctcgaaagcaaataaatgcctttg 303  Q
    ||| || ||  || |||||||| ||||||||||| ||| |||||||||||||| |||||    
T  13399316 ccacggctttcttggccatttgtttaaggctttttctcaaaagcaaataaatgtctttg 13399258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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