View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12738_low_10 (Length: 333)
Name: NF12738_low_10
Description: NF12738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12738_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 321
Target Start/End: Original strand, 13333791 - 13334093
Alignment:
| Q |
19 |
gcggttgagtttgatagttttagaaatgaatgggatcctcaaatcgcaggtaactcacctcatataggaatcgacatcaacacgattaggtcttcagcta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13333791 |
gcggttgagtttgatagttttagaaatgaatgggatcctcaaatcgcaggtaactcacctcatataggaatcgacatcaacacgattaggtcttcagcta |
13333890 |
T |
|
| Q |
119 |
ctgctctatggccaatcgatcgtgtaccagaaggatcgataggaaaggcacacataagttataatcctgcctcgaaaaaattgactgcgctggtaactta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13333891 |
ctgctctatggccaatcgatcgtgtaccagaaggatcgataggaaaggcacacataagttataatcctgcctcgaaaaaattgactgcgctggtaactta |
13333990 |
T |
|
| Q |
219 |
tctaaatggtcctgtcatagaggaaactgctgtatcttatactgttgattttgcggctattctgcccgaatatgtccttgttggtttctccggtgccaca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13333991 |
tctaaatggtcctgtcatagaggaaactgctgtatcttatactgttgattttgcggctattctgcccgaatatgtcctggttggtttctccggtgccaca |
13334090 |
T |
|
| Q |
319 |
ggt |
321 |
Q |
| |
|
||| |
|
|
| T |
13334091 |
ggt |
13334093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 69 - 232
Target Start/End: Original strand, 13308673 - 13308836
Alignment:
| Q |
69 |
taactcacctcatataggaatcgacatcaacacgattaggtcttcagctactgctctatggccaatcgatcgtgtaccagaaggatcgataggaaaggca |
168 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||| | || || |||||||||||||||| ||| ||||| ||||||||||||| |
|
|
| T |
13308673 |
taactcacctcatataggaattgacatcaacacgattgagtcttcgatcagtgttccatggccaatcgatcgtcaacctcaaggaacgataggaaaggct |
13308772 |
T |
|
| Q |
169 |
cacataagttataatcctgcctcgaaaaaattgactgcgctggtaacttatctaaatggtcctg |
232 |
Q |
| |
|
| ||||||||||||| ||||||| ||| | |||| || | |||||||||| |||| |||||| |
|
|
| T |
13308773 |
cgcataagttataatactgcctcaaaagacttgagtgtatttgtaacttatccaaatagtcctg |
13308836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University