View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12738_low_11 (Length: 324)
Name: NF12738_low_11
Description: NF12738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12738_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 88 - 306
Target Start/End: Original strand, 54474702 - 54474920
Alignment:
| Q |
88 |
ttgatatttagttatattatatgctaacaaaaacatgaaatatatttatgtatttgaattgaatagattgtacgggtactggaaggagatgcttcactag |
187 |
Q |
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| T |
54474702 |
ttgatatttagttatattatatgctaacaaaaacatgaaatatatttatgtatttgaattgaatagattgtacgggtactggaaggagatgcttcactag |
54474801 |
T |
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| Q |
188 |
aagtgcttataaaccaggatggagtgaaacctggacatagtgctatgtacagtagcgcaagtggagattatgatgcagggacatacagtgctgacatgaa |
287 |
Q |
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| T |
54474802 |
aagtgcttataaaccaggatggagtgaaacctggacatagtgctatgtacagtagcgcaagtggagattatgatgcagggacatacagtgctgacatgaa |
54474901 |
T |
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| Q |
288 |
aaagttccggaaactagca |
306 |
Q |
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| T |
54474902 |
aaagttccggaaactagca |
54474920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 54474582 - 54474652
Alignment:
| Q |
19 |
agcttgtgcttctgcttgtgttaggcactcaggaagaaggcgtccaagaatgagtcaggtataacataatt |
89 |
Q |
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| T |
54474582 |
agcttgtgcttctgcttgtgttaggcactcaggaagaaggcgtccaagaatgagtcaggtataacataatt |
54474652 |
T |
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