View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12738_low_12 (Length: 318)
Name: NF12738_low_12
Description: NF12738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12738_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 53 - 299
Target Start/End: Original strand, 41248957 - 41249203
Alignment:
| Q |
53 |
tattttatattattgaaatatgagattgaaaaactcacatgcaggatcacaaaacaagtccaactgaaacaaaacattataatgttataaagatagatcc |
152 |
Q |
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| T |
41248957 |
tattttatattattgaaatatgagattgaaaaactcacatgcaggatcacaaaacaagtccaactgaaacaaaacattataatgttataaagatagatcc |
41249056 |
T |
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| Q |
153 |
aactatcatatgtgcagcaccatgcttgttgtggctacctccaaccgtcccaaaaataaccgagcctttgacaaacaatattactatagcacctaaaatt |
252 |
Q |
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| T |
41249057 |
aactatcatatgtgcagcaccatgcttgttgtggctacctccaaccgtcccaaaaataaccgagcctttgacaaacaatattactatagcacctaaaatt |
41249156 |
T |
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| Q |
253 |
gtagctatggtttccaatatctttgcttggcttcttcgacttcttat |
299 |
Q |
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| T |
41249157 |
gtagctatggtttccaatatctttgcttggcttcttcgacttcttat |
41249203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 41248515 - 41248558
Alignment:
| Q |
18 |
caaataaaataaaataactatttcatatgtaatgatattttata |
61 |
Q |
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| T |
41248515 |
caaataaaaataaataactatttcatatgtaataatattttata |
41248558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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