View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12738_low_14 (Length: 303)
Name: NF12738_low_14
Description: NF12738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12738_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 13308952 - 13308669
Alignment:
| Q |
1 |
aagaatatcatgtgtttcagcaacttgaccggtggcacctgagaaaccaacatatacccattccgacagaacagaggcaaaatcaataggataagacgca |
100 |
Q |
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| T |
13308952 |
aagaatatcatgtgtttcagcaacttgaccggtggcacctgagaaaccaacatatacccattccgacagaacagaggcaaaatcaataggataagacaca |
13308853 |
T |
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| Q |
101 |
ataacatcaactttggcaggactatttggataagttacaaacacactcaagtcttttgaggcagtattataacttatgcgagcctttcctatcgttcctt |
200 |
Q |
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| T |
13308852 |
ataacatcaactttggcaggactatttggataagttacaaatacactcaagtcttttgaggcagtattataacttatgcgagcctttcctatcgttcctt |
13308753 |
T |
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| Q |
201 |
gaggttgacgatcgattggccatggaacactgatcgaagactcaatcgtgttgatgtcaattcctatatgaggtgagttagggt |
284 |
Q |
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| T |
13308752 |
gaggttgacgatcgattggccatggaacactgatcgaagactcaatcgtgttgatgtcaattcctatatgaggtgagttagggt |
13308669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 117 - 280
Target Start/End: Complemental strand, 13334004 - 13333841
Alignment:
| Q |
117 |
caggactatttggataagttacaaacacactcaagtcttttgaggcagtattataacttatgcgagcctttcctatcgttccttgaggttgacgatcgat |
216 |
Q |
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|||||| |||| |||||||||| | | || |||| | ||| ||||||| ||||||||||||| | ||||||||||||| ||||| ||| ||||||||| |
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| T |
13334004 |
caggaccatttagataagttaccagcgcagtcaattttttcgaggcaggattataacttatgtgtgcctttcctatcgatccttctggtacacgatcgat |
13333905 |
T |
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| Q |
217 |
tggccatggaacactgatcgaagactcaatcgtgttgatgtcaattcctatatgaggtgagtta |
280 |
Q |
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| T |
13333904 |
tggccatagagcagtagctgaagacctaatcgtgttgatgtcgattcctatatgaggtgagtta |
13333841 |
T |
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