View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12738_low_16 (Length: 284)
Name: NF12738_low_16
Description: NF12738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12738_low_16 |
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| [»] scaffold0048 (1 HSPs) |
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| [»] scaffold0185 (2 HSPs) |
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Alignment Details
Target: scaffold0048 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 5 - 274
Target Start/End: Original strand, 84632 - 84904
Alignment:
| Q |
5 |
aatgtgtgatcatccctttgaaacaagcactaaaacccataatatattaaagcattgatcgctaacgacttttttggctcaaaaatcattttttagacac |
104 |
Q |
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| T |
84632 |
aatgtgtgatcatccctttgaaaaaagcactaaaacccataatatattaaagcattgatcgctaaagacttttttggctcaaaaatcattttttagacac |
84731 |
T |
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| Q |
105 |
agatattaatacccttgtaatgaaaattctttgtgaagtaaattttctaaacaacaactttttctacaagcatttgttagataataaatcttgtgtcaga |
204 |
Q |
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| T |
84732 |
aggtattaatacccttgtaatgaaaattctttgtgaagtaaattttctatacaacaactttttctacaagcatttgttagataataaatcttgtgtcaga |
84831 |
T |
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| Q |
205 |
aagcaatttacaaactccatcatgtaaattctccctgtt---tgctgtagcatttccacacggtttttctgtg |
274 |
Q |
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| T |
84832 |
aagcaatttacaaactccatcatataaattctccctgtttgctgctgtagcatttccacacggtttttctgtg |
84904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0185 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0185
Description:
Target: scaffold0185; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 159 - 268
Target Start/End: Complemental strand, 7631 - 7519
Alignment:
| Q |
159 |
caactttttctacaagcatttgttagataataaatcttgtgtcagaaagcaatttacaaactccatcatgtaaattctccctgtt---tgctgtagcatt |
255 |
Q |
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| T |
7631 |
caactttttctacaagcacttgttacataataaatctattgtcagaaagcaatatacaaattccatcatgcaaattctctctgtttgctgctgtagcatt |
7532 |
T |
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| Q |
256 |
tccacacggtttt |
268 |
Q |
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| T |
7531 |
tacacacggtttt |
7519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0185; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 7743 - 7646
Alignment:
| Q |
65 |
gctaacgacttttttggctcaaaaatcattttttagacacagatattaatacccttgtaatgaaaattctttgtgaagtaaattttctaaacaacaac |
162 |
Q |
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| T |
7743 |
gctaaagatttttttagcttaaagatcattttttagacagatgtattaataccggtgaaatgcaaattttttgcaaagtaaattttctatacaacaac |
7646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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