View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12738_low_18 (Length: 253)

Name: NF12738_low_18
Description: NF12738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12738_low_18
NF12738_low_18
[»] chr6 (6 HSPs)
chr6 (15-253)||(11169878-11170116)
chr6 (15-253)||(11208700-11208938)
chr6 (25-155)||(11275272-11275402)
chr6 (86-158)||(11196117-11196189)
chr6 (113-162)||(11155697-11155746)
chr6 (109-169)||(11132411-11132471)


Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 11169878 - 11170116
Alignment:
Q  15 cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11169878 cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctag 11169977  T
Q  115 caagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaataacttttaggttgtcttcagctgtggtgaatgacttttccctattg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11169978 caagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaataacttttaggttgtcttcagctgtggtgaatgacttttccctattg 11170077  T
Q  215 gtaggaatcgtggtattcctaggaattattacgctcatg 253  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  11170078 gtaggaatcgtggtattcctaggaattattacgcccatg 11170116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 11208700 - 11208938
Alignment:
Q  15 cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | | || |||||||||||| ||||||||||||||||||||||| ||||||    
T  11208700 cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaatttttgatcaccttttggacatggaggaatttcaaactcaaaagatcctag 11208799  T
Q  115 caagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaataact-tttaggttgtcttcagctgtggtgaatgacttttccctatt 213  Q
    ||||||||||||||||||| ||||||||||||||||||||||   ||| || | |||| ||| |||||  ||||   |||||| ||   | |||| ||||    
T  11208800 caagttgttgtccttagttgtttgcctctcaccctcataaacggaaattgata-aactattttggttgggttcactggtggtgtatacatcttccatatt 11208898  T
Q  214 ggtaggaatcgtggtattcctaggaattattacgctcatg 253  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  11208899 ggtaggaatcgtggtattcctaggaattattacgctcatg 11208938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 155
Target Start/End: Original strand, 11275272 - 11275402
Alignment:
Q  25 taagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctagcaagttgttg 124  Q
    |||||||||||||| || |||||||||||||||||| || ||  ||||| ||  ||||| ||||||||||||||||  ||||| ||||||||||||||||    
T  11275272 taagatgccatcattgtcaatttggaagttgaccaccaattgaggaacatctactggacatggaggaatttcaaacctaaaagttcctagcaagttgttg 11275371  T
Q  125 tccttagttatttgcctctcaccctcataaa 155  Q
    ||||||||| ||| |||||||||||||||||    
T  11275372 tccttagttgttttcctctcaccctcataaa 11275402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 158
Target Start/End: Original strand, 11196117 - 11196189
Alignment:
Q  86 ggaggaatttcaaactcaaaagctcctagcaagttgttgtccttagttatttgcctctcaccctcataaacat 158  Q
    ||||||||||| ||| ||||   ||||||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  11196117 ggaggaatttccaacacaaatcttcctagcaagttgttgtccctagttattttcctctcaccttcataaacat 11196189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 11155697 - 11155746
Alignment:
Q  113 agcaagttgttgtccttagttatttgcctctcaccctcataaacatgaat 162  Q
    ||||||||||| ||| ||||||||| ||||||||| ||||||||||||||    
T  11155697 agcaagttgttttccctagttattttcctctcaccttcataaacatgaat 11155746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 11132411 - 11132471
Alignment:
Q  109 tcctagcaagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaata 169  Q
    |||||||||||||||  || |||||||||  || |||||||| |||||||||||| |||||    
T  11132411 tcctagcaagttgttccccatagttatttttctttcaccctcgtaaacatgaatcaaaata 11132471  T

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