View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12738_low_20 (Length: 250)
Name: NF12738_low_20
Description: NF12738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12738_low_20 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 41481360 - 41481121
Alignment:
| Q |
12 |
agagagtagttagaggttgttagggagagagaataaagtattggaaagttgttaattctatttattgat-gaatagagaggttacatagtacttatatat |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
41481360 |
agagagtagttagaggttgttagggagagagaataaagtattggaaagttgttaattctatttattgattgaatagagaggttacatagtatttatatat |
41481261 |
T |
|
| Q |
111 |
ttaacttagagaacaagtcttatgtaactaactaacaaacttatccaaatgtaaaagctaatcacaattaactttactaaacatgattatggattaataa |
210 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
41481260 |
atgacttagagaacaagtcttatgtaactaactaacaaacttatccaaatgtaaaagctaatcacaattaactctactaaacattattatggattaataa |
41481161 |
T |
|
| Q |
211 |
gaaactaatagttttagggtcataaattacagtcgtaggc |
250 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
41481160 |
gaaactaatagttttagggtcataaattacagtcgtaggc |
41481121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 41645364 - 41645568
Alignment:
| Q |
16 |
agtagttagaggttgttagggagagagaataaagtattggaaagttgttaattctatttattgatgaatagagaggttacatagtacttatatatttaac |
115 |
Q |
| |
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|||||||||||||||||||||||||| |||| ||||||| |||||| ||| | ||| ||| ||||||| ||| |||||| | || ||||||| | || |
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| T |
41645364 |
agtagttagaggttgttagggagagataatagagtattgaaaagttattatgttcattaattaatgaataaagaagttacaaaatatttatatacatgac |
41645463 |
T |
|
| Q |
116 |
ttagagaacaagtcttatgtaactaactaacaaacttatccaaatgtaaaagctaatcacaattaactttactaaacatgattatggattaataagaaac |
215 |
Q |
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|||||| | ||||| |||||||||||||||||||||||||||| |||||||| |||| |||||| ||||||||||| |||||||||||||| |||| |
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| T |
41645464 |
ttagagtgcgagtctcttgtaactaactaacaaacttatccaaattgtaaagctaaacacacttaactctactaaacatggttatggattaataacaaac |
41645563 |
T |
|
| Q |
216 |
taata |
220 |
Q |
| |
|
||||| |
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| T |
41645564 |
taata |
41645568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 26628610 - 26628806
Alignment:
| Q |
20 |
gttagaggttgttagggagagagaataaagtattggaaagttgttaattctatttattgatgaatagagaggttacatagtacttatatatttaacttag |
119 |
Q |
| |
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||||||| |||||| |||||||||| | |||||||||||||||||| | ||| ||| || ||| ||| |||||| | || ||||||| |||||||| |
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| T |
26628610 |
gttagagtttgttatggagagagaagagagtattggaaagttgttatgttcattgattaattaattgaggagttacaaaatatttatatacataacttag |
26628709 |
T |
|
| Q |
120 |
agaacaagtcttatgtaactaactaacaaacttatccaaatgtaaaagctaatcacaattaactttactaaacatgattatggattaataagaaacta |
217 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||| |||||||| || | |||||| |||||||||||||||||||||||||| |||||| |
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| T |
26628710 |
agtgcaagtcttatgtaactaactaacaaacttatccaaatgt-aaagctaaacaaacttaactctactaaacatgattatggattaataacaaacta |
26628806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 25 - 215
Target Start/End: Original strand, 29982579 - 29982768
Alignment:
| Q |
25 |
aggttgttagggagagagaataaagtattggaaagttgt-taattctatttattgatgaatagagaggttacatagtacttatatatttaacttagagaa |
123 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||| | | ||| ||| |||||||||||||| |||||| ||| ||||||| |||||||||||| |
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| T |
29982579 |
aggttgttatggagagagaatagagtattggaaagttttatgatttcattgattgatgaatagagt--ttacatggtatttatatacataacttagagaa |
29982676 |
T |
|
| Q |
124 |
caagtctt-atgtaactaactaacaaacttatccaaatgtaaaagctaatcacaattaactttactaaacatgattatggattaataagaaac |
215 |
Q |
| |
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|||||||| ||||| |||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||| ||||| |||| |
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| T |
29982677 |
caagtcttcatgtagctaactaacaaacttatccaaatgtaaa-gctaatcacaactaactctactaaacttgattatggatcaataacaaac |
29982768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 12103369 - 12103575
Alignment:
| Q |
16 |
agtagttagaggttgttagggagagagaataaagtattggaaagttgttaattct--atttattgatgaatagagaggttacatagtacttatatattta |
113 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| |||||||||||||||||| | | ||| ||||| ||||||||| |||| |||| ||||||| || |
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|
| T |
12103369 |
agtagttagaggatgttacagagagagaatagagtattggaaagttgttattgtttcattgattgacgaatagagaaactacaaagtatttatatacata |
12103468 |
T |
|
| Q |
114 |
acttagagaacaagtcttatgtaactaactaacaaacttatccaaatgtaaaagctaatcacaattaactttactaaacatgatta-tggattaataaga |
212 |
Q |
| |
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||||||||| ||| ||||||||||||||||||| |||||||||| ||| |||| ||| || |||||||| ||||||||||||||| ||||||||||| | |
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| T |
12103469 |
acttagagagcaaatcttatgtaactaactaacggacttatccaattgt-aaagttaaacaaaattaactctactaaacatgattattggattaataaca |
12103567 |
T |
|
| Q |
213 |
aactaata |
220 |
Q |
| |
|
|||||||| |
|
|
| T |
12103568 |
aactaata |
12103575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 3788742 - 3788793
Alignment:
| Q |
169 |
taatcacaattaactttactaaacatgattatggattaataagaaactaata |
220 |
Q |
| |
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||||||||| ||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
3788742 |
taatcacaactaactctactaaacatgattatggattaataacaaactaata |
3788793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 10879017 - 10879102
Alignment:
| Q |
135 |
taactaactaacaaacttatccaaatgtaaaagctaatcacaattaactttactaaac-atgattatggattaataagaaactaata |
220 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||||| | |||||| |||||||||||||||||| ||||||||| |
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|
| T |
10879017 |
taactaactaacaaacttatccaaatgt-aaagctaatcacaactaactctgctaaacaatgattatggattaataacaaactaata |
10879102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 10878498 - 10878604
Alignment:
| Q |
12 |
agagagtagttagaggttgttagggagagagaataaagtattggaaagttgttaattctatttattgatgaatagagaggttacatagtacttatatatt |
111 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||| || ||||||||||||||||| || ||| |||||||||||||||| |||||||||| ||||||| |
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|
| T |
10878498 |
agagagtaattagaggttgttatagagagagaagaa-gtattggaaagttgttattttcattgattgatgaatagagagtttacatagtatttatataca |
10878596 |
T |
|
| Q |
112 |
taacttag |
119 |
Q |
| |
|
|||||||| |
|
|
| T |
10878597 |
taacttag |
10878604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 220
Target Start/End: Complemental strand, 36948733 - 36948646
Alignment:
| Q |
133 |
tgtaactaactaacaaacttatccaaatgtaaaagctaatcacaattaactttactaaacatgattatggattaataagaaactaata |
220 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| || | |||||| || |||||| ||||||||||||| | ||||||||| |
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|
| T |
36948733 |
tgtaactaactaacaaacttatccaaatggtaaagctaaacaaacttaactctaggaaacataattatggattaatcacaaactaata |
36948646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 225
Target Start/End: Original strand, 11749708 - 11749800
Alignment:
| Q |
133 |
tgtaactaactaacaaacttatccaaatgtaaaagctaatcacaattaactt-tactaaacatgattatggattaataagaaactaatagtttt |
225 |
Q |
| |
|
|||||| |||||||||||||||||||| | |||| ||| |||||||||||| | |||| ||||||||||||||||| | ||||||||| |||| |
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|
| T |
11749708 |
tgtaacaaactaacaaacttatccaaa-attaaagataaacacaattaacttcttctaagcatgattatggattaatgaaaaactaataatttt |
11749800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 1418506 - 1418440
Alignment:
| Q |
140 |
aactaacaaacttatccaaatgtaaaagctaatcacaattaactttactaaacatgattatggattaat |
208 |
Q |
| |
|
|||||||||||||| ||| | |||||| ||||||| || ||||| |||||||| ||||||||||||||| |
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|
| T |
1418506 |
aactaacaaactta-ccacaagtaaaa-ctaatcaaaactaactctactaaacttgattatggattaat |
1418440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 19796098 - 19796173
Alignment:
| Q |
132 |
atgtaactaactaacaaacttatccaaatgtaaaagctaatcacaattaactttactaaacatgattatggattaat |
208 |
Q |
| |
|
||||||||||||| |||||||| ||| | ||||| |||||||| || ||||| ||||| || ||||||||||||||| |
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| T |
19796098 |
atgtaactaactaccaaacttaaccacaagtaaa-gctaatcaaaactaactctactagacttgattatggattaat |
19796173 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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