View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12738_low_25 (Length: 230)
Name: NF12738_low_25
Description: NF12738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12738_low_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 213
Target Start/End: Complemental strand, 11157082 - 11156879
Alignment:
| Q |
10 |
agtgagatgaagaatattaagaaccctaataaagcatatgaaaaaaccctaataaatatgagaagagaagaagaagtttggaacctggattgaggaggag |
109 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11157082 |
agtgacatgaagagtattaagaaccctaataaagcatatgaaaaaaccctaataaatatgagaagagaagaagaagtttggaacctggattgaggaggag |
11156983 |
T |
|
| Q |
110 |
ttgttggaggcaaaggggatcacatcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactgcaaatgaaccattttgtagaagtg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
11156982 |
ttgttggaggcaaaggggatcacatcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactggaaatgaaccattttgtaaaagtg |
11156883 |
T |
|
| Q |
210 |
aagg |
213 |
Q |
| |
|
|||| |
|
|
| T |
11156882 |
aagg |
11156879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 11164034 - 11163846
Alignment:
| Q |
19 |
aagaatattaagaaccctaataaagcatatgaaaaaaccctaataaatatgagaagagaagaagaagtttggaacctgg---attgaggaggagttgttg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||| || ||||||||| ||||| |
|
|
| T |
11164034 |
aagaatattaagaaccctaataaagcatatgaaaaaaccctaatagatataagaagagaagaagaagtttgtaacctggtgaatcgaggaggagctgttg |
11163935 |
T |
|
| Q |
116 |
gaggcaaaggggatcacatcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactgcaaatgaaccattttgtag |
204 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| ||||||| || ||||||| | ||| | || |||||||||||||||||| |
|
|
| T |
11163934 |
gagacaaaggggatcacatcccatggagattggttaagctgacaaatgtgtgtttgaagattttgaggtgaaaatgaaccattttgtag |
11163846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 11176746 - 11176672
Alignment:
| Q |
126 |
ggatcacatcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactgcaaatgaaccatttt |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||| || | ||||||| |||||| || |||||||||||||| |
|
|
| T |
11176746 |
ggataacatcccatggagattggttaaggtgacaaacgtgcgcttgaaaagtttcaattggaaatgaaccatttt |
11176672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 11176830 - 11176753
Alignment:
| Q |
10 |
agtgagatgaagaatattaagaaccctaataaagcatatgaa---aaaaccctaataaatatgagaagagaagaagaa |
84 |
Q |
| |
|
||||| ||||||||||| |||||||||||| || ||||||| |||||||||||| || ||||||||||| ||||| |
|
|
| T |
11176830 |
agtgatatgaagaatatgaagaaccctaatgaatgatatgaaaaaaaaaccctaatagatctgagaagagaataagaa |
11176753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 121 - 212
Target Start/End: Original strand, 4703888 - 4703979
Alignment:
| Q |
121 |
aaaggggatcacatcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactgcaaatgaaccattttgtagaagtgaag |
212 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||| || |||||||| |||||| | |||||| |||||||||| ||||||| |
|
|
| T |
4703888 |
aaaggggatggcatcccatggagattggttaagctgacaaacgtgcatttgaaaaggttcaaccggtaatgaatcattttgtagtagtgaag |
4703979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University