View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12738_low_26 (Length: 229)
Name: NF12738_low_26
Description: NF12738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12738_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 72 - 212
Target Start/End: Original strand, 35803276 - 35803401
Alignment:
| Q |
72 |
ctcaccactatctcgtgcctcactactatcttcagcatagtgataaaaattgatataaggattgtcatacggactattgtcatacagaccatcggcataa |
171 |
Q |
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| T |
35803276 |
ctcactactatctcgtgcctcactactatcttcagcatagcgataaaaattgatataagg---------------attgtcatacagaccattgtcataa |
35803360 |
T |
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| Q |
172 |
cctctatcaaaactgaggtcgtcgatggagaatccaacatg |
212 |
Q |
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| T |
35803361 |
cctctatcaaaactgaggtcgtcgatggagaattcaacatg |
35803401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 35803229 - 35803291
Alignment:
| Q |
1 |
ttatccagccaatttgaatagatattgtgtagcaatgcagtgtgtgcctcactactatctcgt |
63 |
Q |
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| T |
35803229 |
ttatccagccaatttgaatagatattgtgtagcaatgcagtgtgtgcctcactactatctcgt |
35803291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 5 - 212
Target Start/End: Complemental strand, 35851969 - 35851777
Alignment:
| Q |
5 |
ccagccaatttgaatagatattgtgtagcaatgcagtgtgtgcctcactactatctcgtagtcgtgtctcaccactatctcgt---gcctcactactatc |
101 |
Q |
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| T |
35851969 |
ccagccaatttgaatagatattatgtagcaatgcagtttctgcctcagttctatcttgt------gcctcactactatctcgtcgtgcctcactactatc |
35851876 |
T |
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| Q |
102 |
ttcagcatagtgataaaaattgatataaggattgtcatacggactattgtcatacagaccatcggcataacctctatcaaaactgaggtcgtcgatggag |
201 |
Q |
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| T |
35851875 |
ttcaacatagtgataaggattgccataaagattgtcatacagatcattgtcatacag------------acctctatcaaaactgaggtcgtcgatgttg |
35851788 |
T |
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