View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12738_low_5 (Length: 430)
Name: NF12738_low_5
Description: NF12738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12738_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 3 - 418
Target Start/End: Original strand, 4091879 - 4092294
Alignment:
| Q |
3 |
agaaaataaaatttgtgcagaaaatcatagagatggagggaagtggcctcaaaccaattgcatttgcttatagaaaaacgtatttgcaggtactcaagca |
102 |
Q |
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| T |
4091879 |
agaaaataaaatttgtgcagaaaatcatagagatggagggaagtggcctcaaaccaattgcatttgcttatagaaaaacgtatttgcaggtactcgagca |
4091978 |
T |
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| Q |
103 |
agacgatttgaccttgttagctctgataggtttcaaggaaaaatctcgagaatcgataaaatcagctttgcaaggtgtccaaaatactggaataaagata |
202 |
Q |
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| T |
4091979 |
agacgatttgaccttgttagctctgataggtttcaaggaaaaatctcgagaatcgataaaatcagctttgcaaggtgtccaaaatactggaataaagata |
4092078 |
T |
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| Q |
203 |
aaattgatctcagaggatgacatcgatttagttgaagagatagcttatgaactgggaatagaagtgccggtaggcggtcaccttgacggaaaagaattta |
302 |
Q |
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| T |
4092079 |
aaattgatctcagaggatgacatcgatttagttgaagagatagcttatgaactgggaatagaagtgccggtaggcggtcaccttgagggaaaagaattta |
4092178 |
T |
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| Q |
303 |
aggatttgcatgaaggagctagattcgatgaagtggataaagccatagcaatgggaagcttctgtgctgaagataagctttgtatggtgaattatttgca |
402 |
Q |
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| T |
4092179 |
aggatttgcatgaaggagctagattcgatgaagtggataaagccatagcaatgggaagcttctgtgctgaagataagctttgtatggtgaattatttgca |
4092278 |
T |
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| Q |
403 |
agacaaaggtgatgtc |
418 |
Q |
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| T |
4092279 |
agacaaaggtgatgtc |
4092294 |
T |
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Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 46 - 382
Target Start/End: Complemental strand, 42592857 - 42592521
Alignment:
| Q |
46 |
tggcctcaaaccaattgcatttgcttatagaaaaacgtatttgcaggtactcaagcaagacgatttgaccttgttagctctgataggtttcaaggaaaaa |
145 |
Q |
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| T |
42592857 |
tggccttaagccaattgcacttgcttatagacaaacacaagtgcaagaactcaagcaagatgaattgaccttgttggcactggtaggtctcaaatacaag |
42592758 |
T |
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| Q |
146 |
tctcgagaatcgataaaatcagctttgcaaggtgtccaaaatactggaataaagataaaattgatctcagaggatgacatcgatttagttgaagagatag |
245 |
Q |
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| T |
42592757 |
tgtcgagaatcgacaaaaaaagctttgaaaaatctgcaaaatgatggaatacatatcaaattggtctcgacggatgacatcatggtagtgaaagaaacag |
42592658 |
T |
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| Q |
246 |
cttatgaactgggaatagaagtgccggtaggcggtcaccttgacggaaaagaatttaaggatttgcatgaaggagctagattcgatgaagtggataaagc |
345 |
Q |
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| T |
42592657 |
cttgtgaactgggaatagaagtgccggtagacggacaccttgaaggaaaagaacttcaatacttgaatggcaaagctagattagttaaactgggtaaagc |
42592558 |
T |
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| Q |
346 |
catagcaatgggaagcttctgtgctgaagataagctt |
382 |
Q |
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| T |
42592557 |
cattgcaatgggaagcttcagtcctgaagacaagctt |
42592521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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