View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12738_low_6 (Length: 405)

Name: NF12738_low_6
Description: NF12738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12738_low_6
NF12738_low_6
[»] chr6 (4 HSPs)
chr6 (20-343)||(988886-989234)
chr6 (362-396)||(988833-988867)
chr6 (274-311)||(19745341-19745378)
chr6 (275-307)||(24783769-24783801)
[»] chr1 (5 HSPs)
chr1 (274-314)||(40905825-40905865)
chr1 (274-311)||(9922208-9922245)
chr1 (274-311)||(41081256-41081293)
chr1 (274-311)||(15873804-15873841)
chr1 (275-311)||(27446681-27446717)
[»] chr4 (5 HSPs)
chr4 (273-311)||(28485798-28485836)
chr4 (273-311)||(47064042-47064080)
chr4 (274-311)||(23149862-23149899)
chr4 (274-311)||(29728740-29728777)
chr4 (274-311)||(56446881-56446918)
[»] chr8 (3 HSPs)
chr8 (274-308)||(6568582-6568616)
chr8 (274-307)||(26413398-26413431)
chr8 (274-311)||(39162259-39162296)
[»] chr7 (2 HSPs)
chr7 (274-311)||(32002077-32002114)
chr7 (278-311)||(46896124-46896157)
[»] chr5 (1 HSPs)
chr5 (274-311)||(37993624-37993661)
[»] chr3 (3 HSPs)
chr3 (274-311)||(1707272-1707309)
chr3 (274-311)||(20494024-20494061)
chr3 (274-311)||(23944942-23944979)
[»] chr2 (1 HSPs)
chr2 (274-311)||(15997487-15997524)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 20 - 343
Target Start/End: Complemental strand, 989234 - 988886
Alignment:
Q  20 gataacacctccaaaactct--tcaacgaagaagaaaaggaatggagctaaaagaacaccttgcttcaaactctttagatattaactttcatactattta 117  Q
    ||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  989234 gataacacctccaaaactctcttcaacgaaaaagaaaaggaatggagctaaaagaacaccttgcttcaaactctttagatattaactttcatactattta 989135  T
Q  118 caagcatcgccaaatttcctgaaaacaca---accatatacccaaactctatacttgttaggaaaactaaacttct-------------------atccc 195  Q
    |||||||||||||||||||||||||||||   ||||||||||| ||||||||||||||||||||||||||||||||                   |||||    
T  989134 caagcatcgccaaatttcctgaaaacacaaccaccatatacccgaactctatacttgttaggaaaactaaacttctatcatagtatgatcaatgaatccc 989035  T
Q  196 taattaatgaagttaccattttttca-ttaagagttaatgagttggaggtcataattcaagtcctatcaagnnnnnnnttaacataacaattaaaatact 294  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||||||||||    
T  989034 taattaatgaagttaccatttttttagttaagagttaatgagttggaggtcataattcaagtcctaccaagaaaaaaattaacataacaattaaaatact 988935  T
Q  295 aacatttgtcattaaaataacccattttttgaaattaaccttaaaaatc 343  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  988934 aacatttgccattaaaataacccattttttgaaattaaccttaaaaatc 988886  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 362 - 396
Target Start/End: Complemental strand, 988867 - 988833
Alignment:
Q  362 ctatcttcttaaccatgtcaaccaactcattcatc 396  Q
    |||||||||||||||||||||||||||||||||||    
T  988867 ctatcttcttaaccatgtcaaccaactcattcatc 988833  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 19745341 - 19745378
Alignment:
Q  274 taacataacaattaaaatactaacatttgtcattaaaa 311  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  19745341 taacataacaattaacatactaacaattgtcattaaaa 19745378  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 307
Target Start/End: Complemental strand, 24783801 - 24783769
Alignment:
Q  275 aacataacaattaaaatactaacatttgtcatt 307  Q
    |||||||||| ||||||||||||||||||||||    
T  24783801 aacataacaactaaaatactaacatttgtcatt 24783769  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 40905825 - 40905865
Alignment:
Q  274 taacataacaattaaaatactaacatttgtcattaaaataa 314  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  40905825 taacataacaattaacatactaacatttgtcattaaaataa 40905865  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 9922208 - 9922245
Alignment:
Q  274 taacataacaattaaaatactaacatttgtcattaaaa 311  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  9922208 taacataacaattaacatactaacatttgtcattaaaa 9922245  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 41081256 - 41081293
Alignment:
Q  274 taacataacaattaaaatactaacatttgtcattaaaa 311  Q
    |||||||||||||||||||||||||||||||| |||||    
T  41081256 taacataacaattaaaatactaacatttgtcactaaaa 41081293  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 15873804 - 15873841
Alignment:
Q  274 taacataacaattaaaatactaacatttgtcattaaaa 311  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  15873804 taacataacaattaacatactaacatttgttattaaaa 15873841  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 27446681 - 27446717
Alignment:
Q  275 aacataacaattaaaatactaacatttgtcattaaaa 311  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  27446681 aacataacaaataacatactaacatttgtcattaaaa 27446717  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 311
Target Start/End: Original strand, 28485798 - 28485836
Alignment:
Q  273 ttaacataacaattaaaatactaacatttgtcattaaaa 311  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  28485798 ttaacataacaattaacatactaacatttgtcattaaaa 28485836  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 311
Target Start/End: Complemental strand, 47064080 - 47064042
Alignment:
Q  273 ttaacataacaattaaaatactaacatttgtcattaaaa 311  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  47064080 ttaacatagcaattaaaatactaacatttgtcattaaaa 47064042  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 23149899 - 23149862
Alignment:
Q  274 taacataacaattaaaatactaacatttgtcattaaaa 311  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  23149899 taacataacaattaacatactaacatttgtcattaaaa 23149862  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 29728777 - 29728740
Alignment:
Q  274 taacataacaattaaaatactaacatttgtcattaaaa 311  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  29728777 taacataacaattaacatactaacacttgtcattaaaa 29728740  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 56446918 - 56446881
Alignment:
Q  274 taacataacaattaaaatactaacatttgtcattaaaa 311  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  56446918 taacatatcaattaacatactaacatttgtcattaaaa 56446881  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 308
Target Start/End: Original strand, 6568582 - 6568616
Alignment:
Q  274 taacataacaattaaaatactaacatttgtcatta 308  Q
    ||||||||||||| |||||||||||||||||||||    
T  6568582 taacataacaatttaaatactaacatttgtcatta 6568616  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 307
Target Start/End: Complemental strand, 26413431 - 26413398
Alignment:
Q  274 taacataacaattaaaatactaacatttgtcatt 307  Q
    ||||||||||||||| ||||||||||||||||||    
T  26413431 taacataacaattaacatactaacatttgtcatt 26413398  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 39162259 - 39162296
Alignment:
Q  274 taacataacaattaaaatactaacatttgtcattaaaa 311  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  39162259 taacataacaattaacatactaacatttgccattaaaa 39162296  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 32002114 - 32002077
Alignment:
Q  274 taacataacaattaaaatactaacatttgtcattaaaa 311  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  32002114 taacataacaattaacatactaacatttgccattaaaa 32002077  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 311
Target Start/End: Complemental strand, 46896157 - 46896124
Alignment:
Q  278 ataacaattaaaatactaacatttgtcattaaaa 311  Q
    ||||||||||| ||||||||||||||||||||||    
T  46896157 ataacaattaacatactaacatttgtcattaaaa 46896124  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 37993624 - 37993661
Alignment:
Q  274 taacataacaattaaaatactaacatttgtcattaaaa 311  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  37993624 taacataacaattaacatactaacatttgtcgttaaaa 37993661  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 1707309 - 1707272
Alignment:
Q  274 taacataacaattaaaatactaacatttgtcattaaaa 311  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  1707309 taacataacaattaacataataacatttgtcattaaaa 1707272  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 20494024 - 20494061
Alignment:
Q  274 taacataacaattaaaatactaacatttgtcattaaaa 311  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  20494024 taacataataattaacatactaacatttgtcattaaaa 20494061  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 23944979 - 23944942
Alignment:
Q  274 taacataacaattaaaatactaacatttgtcattaaaa 311  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  23944979 taacataacaattaaaataccaacctttgtcattaaaa 23944942  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 15997487 - 15997524
Alignment:
Q  274 taacataacaattaaaatactaacatttgtcattaaaa 311  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  15997487 taacataacaattaacatactaacatttttcattaaaa 15997524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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