View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12738_low_9 (Length: 351)
Name: NF12738_low_9
Description: NF12738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12738_low_9 |
 | |
|
| [»] scaffold0442 (1 HSPs) |
| | |
|
| [»] scaffold0167 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 8211466 - 8211148
Alignment:
| Q |
18 |
gttcttgtacaatccgccatcaagtaagattgtgcaaccagcaaatgagagtgtactgcaacattagaatgaaaacgttaattaaaatagattgaaattg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8211466 |
gttcttgtacaatccgccatcaagtaagattgtgcaaccagcaaatgagagtgtattgcaacattagaatgaaaacgttaattaaaatagattgaaattg |
8211367 |
T |
|
| Q |
118 |
agagtgaaacatacattcaaaattctgcagagtttaattaatggnnnnnnnttcaaacaaattgtaaaaacttctaaccttgatgctccttcaattgttt |
217 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8211366 |
agagtgaaacatacagtcaaaattctgcagagtttaattaatggaaaaaaattcaaacaaattataaaaacttctaacctcgatgctccttcaattgttt |
8211267 |
T |
|
| Q |
218 |
gtctctcttgggaaaaattgtggaaccgcataaaactactcaattctaagtgggattgatttattaatagcaacaatgacattttagtttacggtaaaat |
317 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8211266 |
gtctctcttgggaaaaattatggaaccacataaaactgctcaattctaagtgggattgatttattaatagcaacaatgacattttagtttacggtaaaat |
8211167 |
T |
|
| Q |
318 |
gggaagtaaaataggttac |
336 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
8211166 |
gggaagtaaaataggttac |
8211148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 9289706 - 9289388
Alignment:
| Q |
18 |
gttcttgtacaatccgccatcaagtaagattgtgcaaccagcaaatgagagtgtactgcaacattagaatgaaaacgttaattaaaatagattgaaattg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9289706 |
gttcttgtacaatccgccatcaagtaagattgtgcaaccagcaaatgagagtgtattgcaacattagaatgaaaatgttaattaaaatagattgaaattg |
9289607 |
T |
|
| Q |
118 |
agagtgaaacatacattcaaaattctgcagagtttaattaatggnnnnnnnttcaaacaaattgtaaaaacttctaaccttgatgctccttcaattgttt |
217 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9289606 |
agagtgaaacatacagtcaaaattctgcagagtttaattaatggaaaaaaattcaaacaaattataaaaacttctaaccttgatgctccttcaattgttt |
9289507 |
T |
|
| Q |
218 |
gtctctcttgggaaaaattgtggaaccgcataaaactactcaattctaagtgggattgatttattaatagcaacaatgacattttagtttacggtaaaat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9289506 |
gtctctcttgggaaaaattgtggaaccgcataaaactgctcaattctaagtgggattgatttatgaatagcaacaatggcattttagtttacggtaaaat |
9289407 |
T |
|
| Q |
318 |
gggaagtaaaataggttac |
336 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
9289406 |
gggaagtaaaataggttac |
9289388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 51423893 - 51423576
Alignment:
| Q |
18 |
gttcttgtacaatccgccatcaagtaagattgtgcaaccagcaaatgagagtgtactgcaacattagaatgaaaacgttaattaaaatagattgaaattg |
117 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
51423893 |
gttcttgtacaatccgccatcaagtgaggttgtgcaaccagcaaatgagagtgtattgcaacattagaatgaaaacgttaattaaaataaattgaaattg |
51423794 |
T |
|
| Q |
118 |
agagtgaaacatacattcaaaattctgcagagtttaattaatggnnnnnnnttcaaacaaattgtaaaaacttctaaccttgatgctccttcaattgttt |
217 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||| | |||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
51423793 |
agagtgaaacatacagtcaaaattctacagagtttaattaatagaaaaaa-ttcaaacaaattataaaaacttctaacctggatgctccttcaattgttt |
51423695 |
T |
|
| Q |
218 |
gtctctcttgggaaaaattgtggaaccgcataaaactactcaattctaagtgggattgatttattaatagcaacaatgacattttagtttacggtaaaat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
51423694 |
gtctctcttgggaaaaattgtggaaccgcataaaactgctcaattctaagtgggattgatttattaatagcaacaataacattttagtttatagtaaaat |
51423595 |
T |
|
| Q |
318 |
gggaagtaaaataggttac |
336 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
51423594 |
gggaagtaaaataggttac |
51423576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 11685494 - 11685194
Alignment:
| Q |
18 |
gttcttgtacaatccgccatcaagtaagattgtgcaaccagcaaatgagagtgtactgcaacattagaatgaaaacgttaattaaaatagattgaaattg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11685494 |
gttcttgtacaatccgccatcaagtaagattgtgtaaccagcaaatgagagtgtattgcaacattagaatgaaaacgttaattaaaatagattgaaattg |
11685395 |
T |
|
| Q |
118 |
agagtgaaacatacattcaaaattctgcagagtttaattaatggnnnnnnnttcaaacaaattgtaaaaacttctaaccttgatgctccttcaattgttt |
217 |
Q |
| |
|
||||||||||||| | ||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11685394 |
agagtgaaacatagagtcaaaattctgcagagtctaattaatggaaaaaaattcaaacaaattataaaaacttctaacctcgatgctccttcaattgttt |
11685295 |
T |
|
| Q |
218 |
gtctctcttgggaaaaattgtggaaccgcataaaactactcaattctaagtgggattgatttattaatagcaacaatgacattttagtttacggtaaaat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11685294 |
gtctctcttgggaaaaattgtggaaccgcat------------------gtgggattgatttattaatagcaacaatggcattttagtttacggtaaaat |
11685213 |
T |
|
| Q |
318 |
gggaagtaaaataggttac |
336 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
11685212 |
gggaagtaaaataggttac |
11685194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 288 - 336
Target Start/End: Complemental strand, 32060277 - 32060229
Alignment:
| Q |
288 |
caacaatgacattttagtttacggtaaaatgggaagtaaaataggttac |
336 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32060277 |
caacaatgacattttagtttacgataaaatgggaagtaaaataggttac |
32060229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 286 - 336
Target Start/End: Original strand, 12840780 - 12840830
Alignment:
| Q |
286 |
agcaacaatgacattttagtttacggtaaaatgggaagtaaaataggttac |
336 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12840780 |
agcaacaatggcattttagcttacggtaaaatgggaagtaaaataggttac |
12840830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 14463302 - 14463620
Alignment:
| Q |
18 |
gttcttgtacaatccgccatcaagtaagattgtgcaaccagcaaatgagagtgtactgcaacattagaatgaaaacgttaattaaaatagattgaaattg |
117 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14463302 |
gttcttgtacaatccgccatcaagtaaaattgtgcaaccagcaaatgagagcgtattgcaacattagaatgaaaatgttaattaaaatagattgaaattg |
14463401 |
T |
|
| Q |
118 |
agagtgaaacatacattcaaaattctgcagagtttaattaatggnnnnnnnttcaaacaaattgtaaaaacttctaaccttgatgctccttcaattgttt |
217 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||| ||||||||||||| || || ||||||||||||||| |
|
|
| T |
14463402 |
agagtgaaacatacactcaaaattctgcatagtttaattaatggaaaaaaattcaaacaaattataaaaacttctaatctctattctccttcaattgttt |
14463501 |
T |
|
| Q |
218 |
gtctctcttgggaaaaattgtggaaccgcataaaactactcaattctaagtgggattgatttattaatagcaacaatgacattttagtttacggtaaaat |
317 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14463502 |
gtctctcttaggaaaaattgtggaaccgcataaaactgctcaattctaagtgggtttgatttattaatagcaacaatggcattttagtttacggtaaaat |
14463601 |
T |
|
| Q |
318 |
gggaagtaaaataggttac |
336 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
14463602 |
gggaagtaaaataggttac |
14463620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 7055483 - 7055799
Alignment:
| Q |
18 |
gttcttgtacaatccgccatcaagtaagattgtgcaaccagcaaatgagagtgtactgcaacattagaatgaaaacgttaattaaaatagattgaaattg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||||||| || | ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7055483 |
gttcttgtacaatccgccatcaagtaagattgtgcaaccggtaaatgagcgtat--tgcaacattagaatgaaaatgttaattaaaatagattgaaattg |
7055580 |
T |
|
| Q |
118 |
agagtgaaacatacattcaaaattctgcagagtttaattaatggnnnnnnnttcaaacaaattgtaaaaacttctaaccttgatgctccttcaattgttt |
217 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| || ||||||||||||||| |
|
|
| T |
7055581 |
agagtgaaacatacactcaaaattctgcagagtttaattaatggaaaaaaattcaaacaaattataaaaacttctaacctctattctccttcaattgttt |
7055680 |
T |
|
| Q |
218 |
gtctctcttgggaaaaattgtggaaccgcataaaactactcaattctaagtgggattgatttattaatagcaacaatgacattttagtttacggtaaaat |
317 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7055681 |
gtctctcttaggaaaaattgtggaaccgcataaaactgctcaattctaagtgggtttgatttattaatagcaacaatggcattttagtttacggtaaaat |
7055780 |
T |
|
| Q |
318 |
gggaagtaaaataggttac |
336 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
7055781 |
gggaagtaaaataggttac |
7055799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0442
Description:
Target: scaffold0442; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 13271 - 13588
Alignment:
| Q |
18 |
gttcttgtacaatccgccatcaagtaagattgtgcaaccagcaaatgagagtgtactgcaacattagaatgaaaacgttaattaaaatagattgaaattg |
117 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13271 |
gttcttgtacaatccaccatcaagtaagattgtgcaaccgacaaatgagagcgtattgcaacattagaatgaaaacgttaattaaaatagattgaaattg |
13370 |
T |
|
| Q |
118 |
agagtgaaacatacattcaaaattctgcagagtttaattaatggnnnnnnnttcaaacaaattgtaaaaacttctaaccttgatgctccttcaattgttt |
217 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| || ||||||||| |||||||| ||||||| || |||||| |||||||| |
|
|
| T |
13371 |
agagtgaaacatacagtcaaaattctgcagagtttaattaatgg-aaaaaattaaaacaaattataaaaactcctaacctctattctccttgaattgttt |
13469 |
T |
|
| Q |
218 |
gtctctcttgggaaaaattgtggaaccgcataaaactactcaattctaagtgggattgatttattaatagcaacaatgacattttagtttacggtaaaat |
317 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||| ||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13470 |
gtctctcttaggaaaaattgtggaactgcataaaactgctcaattctaattgggtttgatttattaatagcaacaatggcattttagtttacggtaaaat |
13569 |
T |
|
| Q |
318 |
gggaagtaaaataggttac |
336 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
13570 |
gggaagtaaaatatgttac |
13588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 38979650 - 38979329
Alignment:
| Q |
18 |
gttcttgtacaatccgccatcaagtaagattgtgcaaccagcaaatgagagtgtactgcaacattagaatgaaaacgttaattaaaatagattgaaattg |
117 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| | | |||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38979650 |
gttcttgtacaatccgacatcaagtaagattgtgcaatcggaaaatgagaatgtattgcaacattagaatgaaaatgttaattaaaatagattgaaattg |
38979551 |
T |
|
| Q |
118 |
agagtgaaacatacattcaaaattctgcagagtttaattaatggnnnnnnnt---tcaaacaaattgtaaaaacttctaaccttgatgctccttcaattg |
214 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| || |||||||||||| |
|
|
| T |
38979550 |
aaagtgaaacatacactcaaaattctgcagagtttaattaatgaaaaaaaaaatatcaaacaaattataaaaacttctaacctctattctccttcaattg |
38979451 |
T |
|
| Q |
215 |
tttgtctctcttgggaaaaattgtggaaccgcataaaactactcaattctaagtgggattgatttattaatagcaacaatgacattttagtttacggtaa |
314 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38979450 |
tttgtctctcttaggaaaaactgtggaaccgcataaaactgctcaattctaagtgggtttgatttattaatagcaacaatggcattttagtttacggtaa |
38979351 |
T |
|
| Q |
315 |
aatgggaagtaaaataggttac |
336 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
38979350 |
aatgggaagtaaaataggttac |
38979329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0167 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0167
Description:
Target: scaffold0167; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 182 - 336
Target Start/End: Original strand, 20221 - 20373
Alignment:
| Q |
182 |
taaaaacttctaaccttgatgctccttcaattgtttgtctctcttgggaaaaattgtggaaccgcataaaactactcaattctaagtgggattgatttat |
281 |
Q |
| |
|
|||||||||||||||| || ||| ||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
20221 |
taaaaacttctaacctctattctcattcaattgtttgtctct--taggaaaaattgtggaaccgcataaaactgctcaattctaagtggatttgatttat |
20318 |
T |
|
| Q |
282 |
taatagcaacaatgacattttagtttacggtaaaatgggaagtaaaataggttac |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20319 |
taatagcaacaatgacattttagtttacggtaaaatgggaagtaaaataggttac |
20373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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