View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12739_high_1 (Length: 357)
Name: NF12739_high_1
Description: NF12739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12739_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 52 - 345
Target Start/End: Original strand, 5315125 - 5315414
Alignment:
| Q |
52 |
tgatgttatattatatattttttaaactgatatacctattataggttacatccaaaatatattaaaagagaagtgatgtnnnnnnnn--gagggggacga |
149 |
Q |
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| T |
5315125 |
tgatgttatattatatattttttaaactgatgtacctattataggttacatccaaaatatattaaaagagaagtgatgtaaaaaaaaaagagggggacga |
5315224 |
T |
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| Q |
150 |
aaccaaaccctgggtaaaatctagcagaacctatagttatagttaggaagccctggcctatattactagcaattcatttggagaggtcctaactggaaca |
249 |
Q |
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| T |
5315225 |
aaccaaaccctaggcaaaatctagcagaacctata------gttaggaagccctggcctatattactagcaattcatttggagaggtcctaactggaaca |
5315318 |
T |
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| Q |
250 |
atggagccaaggttttcaaaaggtcgatagagtcatgtgtttataaatataaattggagaattctctttcaagatgctactgcattgctctcccta |
345 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5315319 |
atggagccaacgttttcaaaaggtcgatagagtcgtgtgtttataaatataaattggagaattctctttcaagatgctactgcattgctctcccta |
5315414 |
T |
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