View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12739_low_2 (Length: 298)
Name: NF12739_low_2
Description: NF12739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12739_low_2 |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 137 - 298
Target Start/End: Original strand, 3794481 - 3794640
Alignment:
| Q |
137 |
aatacattcatctcctacttttcttatttggtnnnnnnntcttgcacttatatttcttttattt--acaatgaatgttaaacttatttattgacttaatt |
234 |
Q |
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| T |
3794481 |
aatacattcatctcctacttttcttatttggtaaaaaaatctttcacttatatttcttttatttttacaataaatgttaaacttatttattgacttaatt |
3794580 |
T |
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| Q |
235 |
ttgttttgtttgctacaacagtgttgtacccatttgcaaatctgatttcaattctgcctcctgt |
298 |
Q |
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| T |
3794581 |
ttgttttgtttgctacaacagtgttgtacccatttgcaaatc----ttcaattctgcctcctgt |
3794640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 137 - 298
Target Start/End: Complemental strand, 7783118 - 7782951
Alignment:
| Q |
137 |
aatacattcatctcctacttttcttattt---ggtnnnnnnntcttgcacttatatttcttttattt--acaatgaatgttaaacttatttatt-gactt |
230 |
Q |
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| T |
7783118 |
aatacattcatctcctacttttctcattttttggtaaaaaaatctttaacttatatttcttttatttttacaataaatattaaacttatttttttgactt |
7783019 |
T |
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| Q |
231 |
aattttgttttgtttgctacaacagtgttgtacccatttgcaaatctgatttcaattctgcctcctgt |
298 |
Q |
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| T |
7783018 |
aattttgttttgtttgctacaatagtgttgtacccatttgcaaatctgatttcaattccacctcctgt |
7782951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 137 - 298
Target Start/End: Complemental strand, 6660748 - 6660589
Alignment:
| Q |
137 |
aatacattcatctcctacttttcttatttggtnnnnnnntcttgcacttatatttcttttattt--acaatgaatgttaaacttatttattgacttaatt |
234 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
6660748 |
aatacattcatctcctacttttcttatttggtaaaaaaatctttcacttatatttcttttatttttacaataaatgttaaacttatttattgacttaatt |
6660649 |
T |
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| Q |
235 |
ttgttttgtttgctacaacagtgttgtacccatttgcaaatctgatttcaattctgcctcctgt |
298 |
Q |
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| T |
6660648 |
ttgttttgtttgctacaacagtgttgtacccatttgcaaatc----ttcaattctgcctcctgt |
6660589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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