View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12739_low_3 (Length: 280)
Name: NF12739_low_3
Description: NF12739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12739_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 4635800 - 4636063
Alignment:
| Q |
1 |
gaaattattactacaaaagtaactttttataagtgatcttcaacacacttattcaaccacatatttatgtgcccttatctagtcacattcccacccaaaa |
100 |
Q |
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|||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4635800 |
gaaattattactactaaagtaactttgtatgagtgatcttcaacacacttattcaaccacatatttatgtgcccttatctagtcacattcccacccaaaa |
4635899 |
T |
|
| Q |
101 |
tggtaaagtatgtttcctttataatttagttacccttttcttccttctcaaaacagtcatacatgaagttaagctaatttcatccataagatacatacag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4635900 |
tggtaaagtatgtttcctttataatttagttacccttttcttccttctcaaaacagtcatacatgaagttaagctaatttcatccataagatacatacag |
4635999 |
T |
|
| Q |
201 |
aagaaacccaattcagcaaacaatagaagtcaattatcagcgcataatcagattacctacaaaa |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4636000 |
aagaaacccaattcagcaaacaatagaagtcaattatcagcgcataatcagattacctacaaaa |
4636063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 46009542 - 46009280
Alignment:
| Q |
1 |
gaaattattactacaaaagtaactttttataagtgatcttcaacacacttattcaaccacatatttatgtgcccttatctagtcacattcccacccaaaa |
100 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
46009542 |
gaaattattactacaaaagtaactttgtatgagtgatcttcaacacacttattcaaccacatatttatgtgcccttatttagtc-cattcccacccaaaa |
46009444 |
T |
|
| Q |
101 |
tggtaaagtatgtttcctttataatttagttacccttttcttccttctcaaaacagtcatacatgaagttaagctaatttcatccataagatacatacag |
200 |
Q |
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| T |
46009443 |
tggtaaagtatgtttcccttataatttagttacccttttcttccttctcaaaacagtcatacatgaagttaagctaatttcatccataagatacatacat |
46009344 |
T |
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| Q |
201 |
aagaaacccaattcagcaaacaatagaagtcaattatcagcgcataatcagattacctacaaaa |
264 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
46009343 |
aagaaacccaattcagcaaacaatagaagtcgattatcagcgcataatcatattacctacaaaa |
46009280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 10243300 - 10243475
Alignment:
| Q |
1 |
gaaattattactacaaaagtaactttttataagtgatcttcaacacacttattcaaccacatattt-atgtgcccttatctagtcacattcccacccaaa |
99 |
Q |
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|
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||| |
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| T |
10243300 |
gaaattattactacaaaagtaactttgtatgagtgatcttcaacacacttattcaaccacatattttatgtgcccttatctagtcccattcccacctaaa |
10243399 |
T |
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| Q |
100 |
atggtaaagtatgtttcctttataattta----gttacccttttcttccttctcaaaacagtcatacatgaagtta |
171 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| | ||||||||||||| |
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| T |
10243400 |
atggtaaagtatgtttcctttataattttaattgttacccttttcttctttctcaaaacaattatacatgaagtta |
10243475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 134 - 239
Target Start/End: Original strand, 10243476 - 10243581
Alignment:
| Q |
134 |
ccttttcttccttctcaaaacagtcatacatgaagttaagctaatttcatccataagatacatacagaagaaacccaattcagcaaacaatagaagtcaa |
233 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||| | |||||||||||||||| |
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| T |
10243476 |
ccttttcttctttctcaaaacaatcatacatgaagttaagcttatttcagccataagatatatacagaagaaacccaatttaagaaacaatagaagtcaa |
10243575 |
T |
|
| Q |
234 |
ttatca |
239 |
Q |
| |
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|||||| |
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|
| T |
10243576 |
ttatca |
10243581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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