View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12739_low_4 (Length: 258)

Name: NF12739_low_4
Description: NF12739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12739_low_4
NF12739_low_4
[»] chr4 (11 HSPs)
chr4 (1-240)||(11179097-11179336)
chr4 (1-227)||(11192350-11192576)
chr4 (1-240)||(11189759-11189998)
chr4 (1-97)||(11166226-11166322)
chr4 (169-233)||(11166114-11166178)
chr4 (1-233)||(11197548-11197779)
chr4 (42-151)||(11174747-11174856)
chr4 (57-232)||(11160741-11160916)
chr4 (1-46)||(6948191-6948236)
chr4 (42-91)||(11182204-11182253)
chr4 (52-150)||(11931879-11931977)
[»] chr7 (1 HSPs)
chr7 (1-46)||(662201-662246)
[»] chr5 (2 HSPs)
chr5 (65-151)||(36686793-36686879)
chr5 (186-226)||(8983183-8983223)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 11179336 - 11179097
Alignment:
Q  1 ttattgagtattgcaagaaacatgttgatgctgcaagttctgatgagcttgagaagtgggacgctgaatttgtcaaggttgatcaaaatactctcttcgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  11179336 ttattgagtattgcaagaaacatgttgatgctgcaagttctgatgagcttgagaagtgggacgctgaatttgtcaaggttgatcaaaatactctcttcaa 11179237  T
Q  101 tgtcatcaaggcggccaactatttaaacatcaagagcctattggatcttacctgcatgactacaatggacaacatcaaggacaagacaccagaggagatt 200  Q
    | |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11179236 tctcatcatggctgccaactatttaaacatcaagagcctattggatcttacctgcatgactacaatggacaacatcaaggacaagacaccagaggagatt 11179137  T
Q  201 cgcaagattttcaacatcaagaatgattacaccccagagg 240  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  11179136 cgcaagattttcaacattaagaatgattacaccccagagg 11179097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 11192576 - 11192350
Alignment:
Q  1 ttattgagtattgcaagaaacatgttgatgctgcaagttctgatgagcttgagaagtgggacgctgaatttgtcaaggttgatcaaaatactctcttcgg 100  Q
    |||||||||||||||||||||||| ||||| || ||||||||||||||||  ||||||||||||||| |||||| ||||||||||| |||||||||||      
T  11192576 ttattgagtattgcaagaaacatgctgatgatgtaagttctgatgagcttaggaagtgggacgctgagtttgtccaggttgatcaagatactctcttcaa 11192477  T
Q  101 tgtcatcaaggcggccaactatttaaacatcaagagcctattggatcttacctgcatgactacaatggacaacatcaaggacaagacaccagaggagatt 200  Q
    | |||||  ||| || |||||| |||||||||| || || ||||||||||| ||||||||| ||   ||||| ||||||||||||||||| |||||||||    
T  11192476 tctcatctcggctgctaactatctaaacatcaaaagtctgttggatcttacatgcatgactgcagcagacaatatcaaggacaagacaccggaggagatt 11192377  T
Q  201 cgcaagattttcaacatcaagaatgat 227  Q
    ||||||||||||||||| |||||||||    
T  11192376 cgcaagattttcaacattaagaatgat 11192350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 11189998 - 11189759
Alignment:
Q  1 ttattgagtattgcaagaaacatgttgatgctgcaagttctgatgagcttgagaagtgggacgctgaatttgtcaaggttgatcaaaatactctcttcgg 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||| |||| |||||| ||||||||||       
T  11189998 ttattgagtattgcaagaaacatgttgatgctgtaagttctgatgagcttaggaagtgggacgctgaatttgtccaggtcgatcaagatactctcttgaa 11189899  T
Q  101 tgtcatcaaggcggccaactatttaaacatcaagagcctattggatcttacctgcatgactacaatggacaacatcaaggacaagacaccagaggagatt 200  Q
      |||||  ||| || |  |||||  |||||||||| ||||  ||||||   || |||||||||    |||||||||||||||||||||| |||||||||    
T  11189898 actcatcttggctgcaaggtatttggacatcaagagtctatatgatcttggatgtatgactacagcaaacaacatcaaggacaagacaccggaggagatt 11189799  T
Q  201 cgcaagattttcaacatcaagaatgattacaccccagagg 240  Q
     |||||||||||||||| ||| |||| |||||||| ||||    
T  11189798 tgcaagattttcaacattaaggatgagtacacccccgagg 11189759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 11166322 - 11166226
Alignment:
Q  1 ttattgagtattgcaagaaacatgttgatgctgcaagttctgatgagcttgagaagtgggacgctgaatttgtcaaggttgatcaaaatactctctt 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||| ||||||||||    
T  11166322 ttattgagtattgcaagaaacatgttgatgctgcaagttctgatgaacttgagaagtgggacgctgaatttgacaagattgatcaagatactctctt 11166226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 11166178 - 11166114
Alignment:
Q  169 acaacatcaaggacaagacaccagaggagattcgcaagattttcaacatcaagaatgattacacc 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11166178 acaacatcaaggacaagacaccagaggagattcgcaagattttcaacattaagaatgattacacc 11166114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 11197779 - 11197548
Alignment:
Q  1 ttattgagtattgcaagaaacatgttgatgctgcaagttctgatgagcttgagaagtgggacgctgaatttgtcaaggttgatcaaaatactctcttcgg 100  Q
    |||||||||||||||||||||||||| |||||  ||||| ||||| ||||  ||| |||||||||||||| ||| | ||||||||| ||||| | ||| |    
T  11197779 ttattgagtattgcaagaaacatgttaatgctaaaagttatgatgggcttaggaattgggacgctgaattcgtcca-gttgatcaagatactatgttcag 11197681  T
Q  101 tgtcatcaaggcggccaactatttaaacatcaagagcctattggatcttacctgcatgactacaatggacaacatcaaggacaagacaccagaggagatt 200  Q
    | |||||  | |  | ||||||||  |||| ||||| || ||||||||||| |  |||||| ||   | ||||||||||||||| |||   | |||||||    
T  11197680 tctcatctcgacttctaactatttggacattaagagtcttttggatcttacattgatgactgcagcaggcaacatcaaggacaatacattggcggagatt 11197581  T
Q  201 cgcaagattttcaacatcaagaatgattacacc 233  Q
    | ||||||||||||||| |||||||||||||||    
T  11197580 cacaagattttcaacattaagaatgattacacc 11197548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 151
Target Start/End: Original strand, 11174747 - 11174856
Alignment:
Q  42 gatgagcttgagaagtgggacgctgaatttgtcaaggttgatcaaaatactctcttcggtgtcatcaaggcggccaactatttaaacatcaagagcctat 141  Q
    ||||| ||| |||||||||| |||||||| ||| ||||||||||| | || ||||||| | |||||  ||| || |||||||| ||||||||||| || |    
T  11174747 gatgaacttaagaagtgggatgctgaattcgtccaggttgatcaagaaaccctcttcgatctcatcttggctgctaactatttgaacatcaagagtcttt 11174846  T
Q  142 tggatcttac 151  Q
    ||||||||||    
T  11174847 tggatcttac 11174856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 232
Target Start/End: Original strand, 11160741 - 11160916
Alignment:
Q  57 tgggacgctgaatttgtcaaggttgatcaaaatactctcttcggtgtcatcaaggcggccaactatttaaacatcaagagcctattggatcttacctgca 156  Q
    |||||| ||||||| ||||||||||| ||| |||| ||||||| | |||||  ||| || |||||| |||||||||| || ||  |||||||||| ||||    
T  11160741 tgggacactgaattcgtcaaggttgaccaagataccctcttcgatctcatcttggctgcaaactatctaaacatcaaaagtctgctggatcttacatgca 11160840  T
Q  157 tgactacaatggacaacatcaaggacaagacaccagaggagattcgcaagattttcaacatcaagaatgattacac 232  Q
     ||||  |   ||||  |||||||  | ||| || ||||||||||| |||| ||||||||| |  |||||||||||    
T  11160841 agactgtagcagacatgatcaagggtaggacgccggaggagattcgtaagactttcaacattattaatgattacac 11160916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 6948236 - 6948191
Alignment:
Q  1 ttattgagtattgcaagaaacatgttgatgctgcaagttctgatga 46  Q
    ||||||||||||||||||| |||||||| ||||| |||||||||||    
T  6948236 ttattgagtattgcaagaagcatgttgaggctgccagttctgatga 6948191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 11182204 - 11182253
Alignment:
Q  42 gatgagcttgagaagtgggacgctgaatttgtcaaggttgatcaaaatac 91  Q
    ||||| ||| ||||||||||||||||||| ||| ||||||||||||||||    
T  11182204 gatgaacttaagaagtgggacgctgaattcgtccaggttgatcaaaatac 11182253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 11931977 - 11931879
Alignment:
Q  52 agaagtgggacgctgaatttgtcaaggttgatcaaaatactctcttcggtgtcatcaaggcggccaactatttaaacatcaagagcctattggatctta 150  Q
    |||| ||||| |||||||| |||||||||||| |   ||| ||||| | | | |||  ||| |||||||||||| |||||||||| |||||||||||||    
T  11931977 agaaatgggatgctgaattcgtcaaggttgataagcctacactctttgatcttatctcggctgccaactatttagacatcaagagtctattggatctta 11931879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 662246 - 662201
Alignment:
Q  1 ttattgagtattgcaagaaacatgttgatgctgcaagttctgatga 46  Q
    |||||||||||||||||||||||||||| ||||| |||||| ||||    
T  662246 ttattgagtattgcaagaaacatgttgaggctgccagttcttatga 662201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 151
Target Start/End: Complemental strand, 36686879 - 36686793
Alignment:
Q  65 tgaatttgtcaaggttgatcaaaatactctcttcggtgtcatcaaggcggccaactatttaaacatcaagagcctattggatcttac 151  Q
    |||||||||||||||||||||| |||| ||| ||| | | |||  ||| || |||||||| |||||||||| | | |||||||||||    
T  36686879 tgaatttgtcaaggttgatcaagatacactcctcgatctgatctcggctgcaaactatttgaacatcaagaacttgttggatcttac 36686793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 8983183 - 8983223
Alignment:
Q  186 acaccagaggagattcgcaagattttcaacatcaagaatga 226  Q
    |||||||||||||| |||||||  |||||||||||||||||    
T  8983183 acaccagaggagatccgcaagacattcaacatcaagaatga 8983223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University