View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12739_low_5 (Length: 252)
Name: NF12739_low_5
Description: NF12739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12739_low_5 |
 | |
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| [»] scaffold0097 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 21262788 - 21262567
Alignment:
| Q |
15 |
cacagagcatagggagagagttaaaaatgagctaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaagctttctta |
114 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21262788 |
cacagagcatagggagagagttagaaatgaggtaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaagctttctta |
21262689 |
T |
|
| Q |
115 |
aacttgtgcaccttattacgagatcgcggtggacttacacatacacgaagggcatctattgaggaacaagtagcaaaatttcttcacatggtaggacata |
214 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
21262688 |
aacttgtgcatcttattacgagatcgcggtggacttacacatacacgaagggcgtctattgaggaacaagtagcaaaatttcttcagatggtaggacata |
21262589 |
T |
|
| Q |
215 |
atgtgagagatcgtgtgatgtc |
236 |
Q |
| |
|
|||||||| ||| ||||||||| |
|
|
| T |
21262588 |
atgtgagaaatcatgtgatgtc |
21262567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 20543 - 20324
Alignment:
| Q |
18 |
agagcatagggagagagttaaaaatgagctaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaagctttcttaaac |
117 |
Q |
| |
|
||||||||| |||| ||||| || || |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
20543 |
agagcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatgttatgatataattcgtatgagtcccaaagctttcgtaaac |
20444 |
T |
|
| Q |
118 |
ttgtgcaccttattacgagatcgcggtggacttacacatacacgaagggcatctattgaggaacaagtagcaaaatttcttcacatggtaggacataatg |
217 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| || |||||||| | |
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|
| T |
20443 |
ttgtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgaggaacaagtagccaaatttcttcacacagtcggacataacg |
20344 |
T |
|
| Q |
218 |
tgagagatcgtgtgatgtcc |
237 |
Q |
| |
|
| ||| |||||||| ||||| |
|
|
| T |
20343 |
tcagaaatcgtgtgttgtcc |
20324 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 22530406 - 22530187
Alignment:
| Q |
18 |
agagcatagggagagagttaaaaatgagctaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaagctttcttaaac |
117 |
Q |
| |
|
||||||||| |||| ||||| || || |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
22530406 |
agagcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatgttatgatataattcgtatgagtcccaaagctttcgtaaac |
22530307 |
T |
|
| Q |
118 |
ttgtgcaccttattacgagatcgcggtggacttacacatacacgaagggcatctattgaggaacaagtagcaaaatttcttcacatggtaggacataatg |
217 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| || |||||||| | |
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|
| T |
22530306 |
ttgtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgaggaacaagtagccaaatttcttcacacagtcggacataacg |
22530207 |
T |
|
| Q |
218 |
tgagagatcgtgtgatgtcc |
237 |
Q |
| |
|
| ||| |||||||| ||||| |
|
|
| T |
22530206 |
tcagaaatcgtgtgttgtcc |
22530187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 22535091 - 22534872
Alignment:
| Q |
18 |
agagcatagggagagagttaaaaatgagctaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaagctttcttaaac |
117 |
Q |
| |
|
||||||||| |||| ||||| || || |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22535091 |
agagcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatgttatgatataattcgtatgagtcccaaagctttcgtaaac |
22534992 |
T |
|
| Q |
118 |
ttgtgcaccttattacgagatcgcggtggacttacacatacacgaagggcatctattgaggaacaagtagcaaaatttcttcacatggtaggacataatg |
217 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| || |||||||| | |
|
|
| T |
22534991 |
ttgtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgaggaacaagtagccaaatttcttcacacagtcggacataacg |
22534892 |
T |
|
| Q |
218 |
tgagagatcgtgtgatgtcc |
237 |
Q |
| |
|
| ||| |||||||| ||||| |
|
|
| T |
22534891 |
tcagaaatcgtgtgttgtcc |
22534872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 25993015 - 25992796
Alignment:
| Q |
18 |
agagcatagggagagagttaaaaatgagctaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaagctttcttaaac |
117 |
Q |
| |
|
||||||||| |||| ||||| || || |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
25993015 |
agagcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatgttatgatataattcgtatgagtcccaaagctttcgtaaac |
25992916 |
T |
|
| Q |
118 |
ttgtgcaccttattacgagatcgcggtggacttacacatacacgaagggcatctattgaggaacaagtagcaaaatttcttcacatggtaggacataatg |
217 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| || |||||||| | |
|
|
| T |
25992915 |
ttgtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgaggaacaagtagccaaatttcttcacacagtcggacataacg |
25992816 |
T |
|
| Q |
218 |
tgagagatcgtgtgatgtcc |
237 |
Q |
| |
|
| ||| |||||||| ||||| |
|
|
| T |
25992815 |
tcagaaatcgtgtgttgtcc |
25992796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 33092160 - 33092379
Alignment:
| Q |
18 |
agagcatagggagagagttaaaaatgagctaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaagctttcttaaac |
117 |
Q |
| |
|
||||||||| |||| ||||| || || |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33092160 |
agagcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatgttatgatataattcgtatgagtcccaaagctttcgtaaac |
33092259 |
T |
|
| Q |
118 |
ttgtgcaccttattacgagatcgcggtggacttacacatacacgaagggcatctattgaggaacaagtagcaaaatttcttcacatggtaggacataatg |
217 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| || |||||||| | |
|
|
| T |
33092260 |
ttgtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgaggaacaagtagccaaatttcttcacacagtcggacataacg |
33092359 |
T |
|
| Q |
218 |
tgagagatcgtgtgatgtcc |
237 |
Q |
| |
|
| ||| |||||||| ||||| |
|
|
| T |
33092360 |
tcagaaatcgtgtgttgtcc |
33092379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 13190835 - 13190616
Alignment:
| Q |
18 |
agagcatagggagagagttaaaaatgagctaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaagctttcttaaac |
117 |
Q |
| |
|
||||||||| |||| ||||| || || |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13190835 |
agagcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatgttatgatataattcgtatgagtcccaaagctttcgtaaac |
13190736 |
T |
|
| Q |
118 |
ttgtgcaccttattacgagatcgcggtggacttacacatacacgaagggcatctattgaggaacaagtagcaaaatttcttcacatggtaggacataatg |
217 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||| |||| |||||||| |||||||||||||| ||||||||||||| || |||||||||| |
|
|
| T |
13190735 |
ttgtgcaccttattacgagatcacggtgggcttacacatacatgaagagcatctatcgaggaacaagtagccaaatttcttcacacagtcggacataatg |
13190636 |
T |
|
| Q |
218 |
tgagagatcgtgtgatgtcc |
237 |
Q |
| |
|
| ||| |||||||| ||||| |
|
|
| T |
13190635 |
tcagaaatcgtgtgttgtcc |
13190616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 20984250 - 20984469
Alignment:
| Q |
18 |
agagcatagggagagagttaaaaatgagctaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaagctttcttaaac |
117 |
Q |
| |
|
||||||||| |||| ||||| || || |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
20984250 |
agagcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatgttatgatataattcgtatgagtcccaaagctttcgtaaac |
20984349 |
T |
|
| Q |
118 |
ttgtgcaccttattacgagatcgcggtggacttacacatacacgaagggcatctattgaggaacaagtagcaaaatttcttcacatggtaggacataatg |
217 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| || |||||||| | |
|
|
| T |
20984350 |
ttgtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgaggaacaagtagccaaatttcttcacacagtcggacataacg |
20984449 |
T |
|
| Q |
218 |
tgagagatcgtgtgatgtcc |
237 |
Q |
| |
|
| ||| |||||||| ||||| |
|
|
| T |
20984450 |
tcagaaatcgtgtgttgtcc |
20984469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 49367484 - 49367265
Alignment:
| Q |
18 |
agagcatagggagagagttaaaaatgagctaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaagctttcttaaac |
117 |
Q |
| |
|
||||||||| |||| ||||| || || |||||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
49367484 |
agagcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatgttatgatataatttgtatgagtcccaaagctttcgtaaac |
49367385 |
T |
|
| Q |
118 |
ttgtgcaccttattacgagatcgcggtggacttacacatacacgaagggcatctattgaggaacaagtagcaaaatttcttcacatggtaggacataatg |
217 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| || |||||||| | |
|
|
| T |
49367384 |
ttgtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgaggaacaagtagccaaatttcttcacacagtcggacataacg |
49367285 |
T |
|
| Q |
218 |
tgagagatcgtgtgatgtcc |
237 |
Q |
| |
|
| ||| |||||||| ||||| |
|
|
| T |
49367284 |
tcagaaatcgtgtgttgtcc |
49367265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 20716705 - 20716486
Alignment:
| Q |
18 |
agagcatagggagagagttaaaaatgagctaatgaaacatattataggaagtgatcgatgttatgatataattcgtatgagtcccaaagctttcttaaac |
117 |
Q |
| |
|
||||||||| |||| ||||| || || |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
20716705 |
agagcatagagagaaagttaggaacgaactaatgaaacatataataggtagtgaccgatgttatgatataattcgtatgagtcccaaagctttcgtaaac |
20716606 |
T |
|
| Q |
118 |
ttgtgcaccttattacgagatcgcggtggacttacacatacacgaagggcatctattgaggaacaagtagcaaaatttcttcacatggtaggacataatg |
217 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| || |||||||| | |
|
|
| T |
20716605 |
ttgtgcaccttattacgagatcacggtgggcttacacatacacgaagagcatctatcgaggaacaagtagccaaatttcttcacacagtcggacataacg |
20716506 |
T |
|
| Q |
218 |
tgagagatcgtgtgatgtcc |
237 |
Q |
| |
|
| ||| |||||||| ||||| |
|
|
| T |
20716505 |
tcagaaatcgtgtgttgtcc |
20716486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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