View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12739_low_6 (Length: 248)
Name: NF12739_low_6
Description: NF12739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12739_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 51369867 - 51369632
Alignment:
| Q |
1 |
tgagttagctcatggaattgaactttctgggttacctttcttttgggctttgaaagatcgtaaagacggtgtatctgaattacctcaaggattcgaggaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51369867 |
tgagttagctcatggaattgaactttctgggttacctttcttttgggctttgaaagatcgtaaagacggtgtatctgaattacctcaaggattcgaggaa |
51369768 |
T |
|
| Q |
101 |
agaacaaaagaacgtggaattgtttggaaaacctgggtaccccagattaaaatcttagctcatccatcaattggtggatgtatgagtcactgtggtggaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51369767 |
agaacaaaagaacgtggaattgtttggaaaacctgggtaccccagatcaaaatcttagctcatccatcaattggtggatgtatgagtcactgtggtggaa |
51369668 |
T |
|
| Q |
201 |
gttcagttgtcgagatgcttcatcttgggcatgttc |
236 |
Q |
| |
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||||||| || ||||||||||||||||||||||||| |
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|
| T |
51369667 |
gttcagtcgttgagatgcttcatcttgggcatgttc |
51369632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 29954586 - 29954819
Alignment:
| Q |
1 |
tgagttagctcatggaattgaactttctgggttacctttcttttgggctttgaaagatcgtaaagacggtgtatctgaattacctcaaggattcgaggaa |
100 |
Q |
| |
|
||||||||| ||||||||||| |||||| |||| ||||||||||||||||||||| ||| |||||| ||| | |||||||||| ||||||| |||||| |
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| T |
29954586 |
tgagttagcgcatggaattgagctttctaggttgcctttcttttgggctttgaaaaatcttaaagagggtacacttgaattacctaaaggatttgaggaa |
29954685 |
T |
|
| Q |
101 |
agaacaaaagaacgtggaattgtttggaaaacctgggtaccccagattaaaatcttagctcatccatcaattggtggatgtatgagtcactgtggtggaa |
200 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||| |||| ||| || |||| |||||||||||| |||||||||||||||||||||||| |||||| | |
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|
| T |
29954686 |
agaacaaaagaatgtggaatcgtttggaaaacatgggcacctcaacttaagatcttagctcatggatcaattggtggatgtatgagtcattgtggttcag |
29954785 |
T |
|
| Q |
201 |
gttcagttgtcgagatgcttcatcttgggcatgt |
234 |
Q |
| |
|
||||||| | |||| ||||||| |||||||||| |
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| T |
29954786 |
gttcagtcattgagaagcttcattttgggcatgt |
29954819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 7e-64; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 14589009 - 14589244
Alignment:
| Q |
1 |
tgagttagctcatggaattgaactttctgggttacctttcttttgggctttgaaagatcgtaaagacggtgtatctgaattacctcaaggattcgaggaa |
100 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||| |||||||||||||| ||||||| |||||| |||||| |||||| ||| |||| ||||||||| |
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| T |
14589009 |
tgagttagctcatggaattgagctttctaggttaccgttcttttgggctttaaaagatcttaaagagggtgtacttgaattgcctaaagggttcgaggaa |
14589108 |
T |
|
| Q |
101 |
agaacaaaagaacgtggaattgtttggaaaacctgggtaccccagattaaaatcttagctcatccatcaattggtggatgtatgagtcactgtggtggaa |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||| |||| |||||| ||||| |||||||||||| ||||||| ||| |||||| || |
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|
| T |
14589109 |
agaacaaaagaacgcggaattgtttggaaaacttgggtaccccagtttaagatcttaactcatggatcaattggtggttgtatgactcattgtggtccaa |
14589208 |
T |
|
| Q |
201 |
gttcagttgtcgagatgcttcatcttgggcatgttc |
236 |
Q |
| |
|
||||||| | || |||||| ||||||||||||||| |
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|
| T |
14589209 |
gttcagtctttgaaatgctttatcttgggcatgttc |
14589244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 14622667 - 14622902
Alignment:
| Q |
1 |
tgagttagctcatggaattgaactttctgggttacctttcttttgggctttgaaagatcgtaaagacggtgtatctgaattacctcaaggattcgaggaa |
100 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||| |||||||||||||| ||||||| |||||| |||||| |||||| ||| |||| ||||||||| |
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| T |
14622667 |
tgagttagctcatggaattgagctttctaggttaccgttcttttgggctttaaaagatcttaaagagggtgtacttgaattgcctaaagggttcgaggaa |
14622766 |
T |
|
| Q |
101 |
agaacaaaagaacgtggaattgtttggaaaacctgggtaccccagattaaaatcttagctcatccatcaattggtggatgtatgagtcactgtggtggaa |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||| ||||||| |||| |||||| ||||| ||||||| |||| ||||||| ||| |||||| | |
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|
| T |
14622767 |
agaacaaaagaacgcggaattgtttggaaaacttgggcaccccagtttaagatcttaactcatgaatcaattagtggttgtatgactcattgtggtccca |
14622866 |
T |
|
| Q |
201 |
gttcagttgtcgagatgcttcatcttgggcatgttc |
236 |
Q |
| |
|
||||||| | || |||||||||||||||||||||| |
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| T |
14622867 |
gttcagtcattgaaatgcttcatcttgggcatgttc |
14622902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 196
Target Start/End: Original strand, 12846568 - 12846759
Alignment:
| Q |
5 |
ttagctcatggaattgaactttctgggttacctttcttttgggctttgaaagatcgtaaagacggtgtatctgaattacctcaaggattcgaggaaagaa |
104 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||| | | ||| | ||| | ||| |||||| |||||||||| || ||| |
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|
| T |
12846568 |
ttagctcatggaattgagctttctaggttacctttcttttgggctttgaaaaacctaaaaaagggtacacttgagttacctaaaggattcgaagatcgaa |
12846667 |
T |
|
| Q |
105 |
caaaagaacgtggaattgtttggaaaacctgggtaccccagattaaaatcttagctcatccatcaattggtggatgtatgagtcactgtggt |
196 |
Q |
| |
|
| |||||||||||||||||||||||||| |||| ||||||| |||| |||||| | ||| | ||||||| || ||||||||||| |||||| |
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| T |
12846668 |
ccaaagaacgtggaattgtttggaaaacatgggcaccccagcttaagatcttatcccatggagcaattggggggtgtatgagtcattgtggt |
12846759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 11531899 - 11532131
Alignment:
| Q |
1 |
tgagttagctcatggaattgaactttctgggttacctttcttttgggctttgaaagatcgtaaagacggtgtatctgaattacctcaaggattcgaggaa |
100 |
Q |
| |
|
||||||||||||||||||||| |||||| |||| ||||||||||||||||||||| ||| |||||| ||| | |||||||||| ||| ||| |||||| |
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|
| T |
11531899 |
tgagttagctcatggaattgagctttctaggttgcctttcttttgggctttgaaaaatcttaaagagggtacacttgaattacctaaagaatttgaggaa |
11531998 |
T |
|
| Q |
101 |
agaacaaaagaacgtggaattgtttggaaaacctgggtaccccagattaaaatcttagctcatccatcaattggtggatgtatgagtcactgtggtggaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||| || |||| |||||||| ||| |||||| |||||||||||||||||||||||| | |
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|
| T |
11531999 |
agaacaaaagaacgtggaattgtttggaaaacatgggcaccacaacttaagatcttagcacatggatcaatcggtggatgtatgagtcactgtggttcag |
11532098 |
T |
|
| Q |
201 |
gttcagttgtcgagatgcttcatcttgggcatg |
233 |
Q |
| |
|
||||||| | |||| ||||||| ||||||||| |
|
|
| T |
11532099 |
gttcagtcattgagaagcttcattttgggcatg |
11532131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 1361936 - 1362131
Alignment:
| Q |
1 |
tgagttagctcatggaattgaactttctgggttacctttcttttgggctttgaaagatcgtaaagacggtgtatctgaattacctcaaggattcgaggaa |
100 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||| ||| | |||||||||| ||||||| |||||| |
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|
| T |
1361936 |
tgagttggctcatggaattgagctttctgggttgtctttcttttgggctttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaa |
1362035 |
T |
|
| Q |
101 |
agaacaaaagaacgtggaattgtttggaaaacctgggtaccccagattaaaatcttagctcatccatcaattggtggatgtatgagtcactgtggt |
196 |
Q |
| |
|
||||| |||||||| |||||||||||||| || |||| ||| ||| ||||||||||||||||| | ||||||||||||||||||||||||||||| |
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|
| T |
1362036 |
agaacgaaagaacgcggaattgtttggaagacatgggcacctcagcttaaaatcttagctcatggagcaattggtggatgtatgagtcactgtggt |
1362131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 20492721 - 20492954
Alignment:
| Q |
1 |
tgagttagctcatggaattgaactttctgggttacctttcttttgggctttgaaagatcgtaaagacggtgtatctgaattacctcaaggattcgaggaa |
100 |
Q |
| |
|
||||||||||||||||||||| | ||| |||||||||||||||||||||||||| | | |||||| ||| | ||||||||| ||||||| || ||| |
|
|
| T |
20492721 |
tgagttagctcatggaattgagcaatctaggttacctttcttttgggctttgaaaaaccttaaagaaggtacacttgaattacccgaaggatttgaagaa |
20492820 |
T |
|
| Q |
101 |
agaacaaaagaacgtggaattgtttggaaaacctgggtaccccagattaaaatcttagctcatccatcaattggtggatgtatgagtcactgtggtggaa |
200 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| |||| ||| ||| | || |||||||||||| |||||||||||||||||||||||| |||||| | |
|
|
| T |
20492821 |
agaacaaaagaatatggaatcgtttggaaaacatgggcaccacagctaaagatcttagctcatggatcaattggtggatgtatgagtcattgtggttcag |
20492920 |
T |
|
| Q |
201 |
gttcagttgtcgagatgcttcatcttgggcatgt |
234 |
Q |
| |
|
||||||| | |||| ||||||| |||||||||| |
|
|
| T |
20492921 |
gttcagtcattgagaagcttcattttgggcatgt |
20492954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 1355050 - 1355245
Alignment:
| Q |
1 |
tgagttagctcatggaattgaactttctgggttacctttcttttgggctttgaaagatcgtaaagacggtgtatctgaattacctcaaggattcgaggaa |
100 |
Q |
| |
|
|||||| ||| |||||||||| ||||||||||| ||||||||||| ||||||| ||| ||||| ||| | |||||||||| |||||||||||||| |
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|
| T |
1355050 |
tgagttggcttatggaattgagctttctgggttgtctttcttttggactttgaagaatctgaaagagggtacacttgaattacctgaaggattcgaggaa |
1355149 |
T |
|
| Q |
101 |
agaacaaaagaacgtggaattgtttggaaaacctgggtaccccagattaaaatcttagctcatccatcaattggtggatgtatgagtcactgtggt |
196 |
Q |
| |
|
|| || |||||||| |||||||||||||| || |||| ||| ||| |||| |||||||||||| | |||||||||||||||||||||| |||||| |
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|
| T |
1355150 |
aggacgaaagaacgcggaattgtttggaagacatgggcacctcagcttaagatcttagctcatggagcaattggtggatgtatgagtcattgtggt |
1355245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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