View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12739_low_8 (Length: 224)
Name: NF12739_low_8
Description: NF12739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12739_low_8 |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 4635593 - 4635813
Alignment:
| Q |
1 |
ggtaaagttcaatatagatgaaatattcaaatatagattgttgttggataatggccaaaatacattctccttaatatttagaataacaaaacataaaata |
100 |
Q |
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| T |
4635593 |
ggtaaagttcaatatagatgaaatattcaaatatagattgttgatggataatggccaaaatacattctccttaatatttagaataacaaaacataaaata |
4635692 |
T |
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| Q |
101 |
gtttataatagatttggaacaaagtacattcattcaccaaaattgaaacatggacctgaaagcatgattaatcattgcattctagtcacctccatgcctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4635693 |
gtttataatagatttggaacaaagtacattcattcaccaaaattgaaacatggacctgaaagtatgattaatcattgcattctagtcacctccatgcctc |
4635792 |
T |
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| Q |
201 |
atcctatgaaattattactac |
221 |
Q |
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||||||||||||||||||||| |
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| T |
4635793 |
atcctatgaaattattactac |
4635813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 46009752 - 46009526
Alignment:
| Q |
1 |
ggtaaagttcaatatagatgaaatattcaaatatagattgttgttggataatggccaaaatacattctccttaatatttagaataacaaaacataaaata |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
46009752 |
ggtaaagttcaatatagatgaaatattcaaatacagattgttgttggataatggccaaaatacattctccttaatatttagaataacaaaacataaatta |
46009653 |
T |
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| Q |
101 |
gtttataatagatttggaacaaagtacattcattcaccaaaattgaaacatggacctgaa---agcatgattaatcattgcattctagtcacctccatgc |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
46009652 |
gtttataatagatttggaacaaagtacattcattcaccaaaattgaaacatggacctgaatgtatgatgattaatcattgcattctagtcacctccatgc |
46009553 |
T |
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| Q |
198 |
ctcatcctatgaaattattactacaaa |
224 |
Q |
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| T |
46009552 |
ctcatcctatgaaattattactacaaa |
46009526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 10243272 - 10243316
Alignment:
| Q |
180 |
ttctagtcacctccatgcctcatcctatgaaattattactacaaa |
224 |
Q |
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| T |
10243272 |
ttctagtcacctccatgcctcatcctatgaaattattactacaaa |
10243316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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