View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1273_high_19 (Length: 264)

Name: NF1273_high_19
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1273_high_19
NF1273_high_19
[»] chr6 (4 HSPs)
chr6 (43-239)||(25167704-25167911)
chr6 (43-121)||(3949324-3949402)
chr6 (45-103)||(4263423-4263481)
chr6 (43-144)||(10989991-10990092)
[»] chr4 (6 HSPs)
chr4 (43-239)||(37049861-37050069)
chr4 (48-142)||(19852453-19852547)
chr4 (48-142)||(16593826-16593920)
chr4 (45-144)||(24239897-24239993)
chr4 (190-233)||(19852312-19852355)
chr4 (45-121)||(16832194-16832270)
[»] chr2 (5 HSPs)
chr2 (46-188)||(37344542-37344684)
chr2 (43-188)||(31092239-31092384)
chr2 (43-144)||(14296310-14296411)
chr2 (45-144)||(18811759-18811858)
chr2 (47-140)||(13502653-13502746)
[»] chr1 (8 HSPs)
chr1 (45-188)||(13062016-13062159)
chr1 (45-144)||(17114768-17114867)
chr1 (45-144)||(41035079-41035178)
chr1 (45-144)||(19394181-19394280)
chr1 (45-144)||(50903536-50903635)
chr1 (45-144)||(49491934-49492032)
chr1 (45-107)||(3374307-3374369)
chr1 (59-98)||(14344068-14344107)
[»] chr3 (9 HSPs)
chr3 (45-188)||(35526615-35526762)
chr3 (45-144)||(51524834-51524933)
chr3 (45-144)||(16893044-16893143)
chr3 (58-141)||(26796887-26796970)
chr3 (58-142)||(31067144-31067228)
chr3 (45-161)||(29346742-29346864)
chr3 (195-233)||(3395821-3395859)
chr3 (194-232)||(21845217-21845255)
chr3 (195-233)||(51524710-51524748)
[»] chr8 (7 HSPs)
chr8 (45-184)||(29369030-29369169)
chr8 (46-144)||(27786842-27786940)
chr8 (45-142)||(8831276-8831373)
chr8 (43-140)||(36206472-36206569)
chr8 (45-142)||(28225767-28225864)
chr8 (79-144)||(399808-399873)
chr8 (195-233)||(8831476-8831514)
[»] chr5 (6 HSPs)
chr5 (45-184)||(19215309-19215448)
chr5 (58-188)||(788342-788472)
chr5 (47-144)||(36868259-36868356)
chr5 (81-144)||(37307257-37307320)
chr5 (45-144)||(15188033-15188129)
chr5 (194-229)||(19215245-19215280)
[»] scaffold0531 (1 HSPs)
scaffold0531 (45-147)||(10223-10325)
[»] chr7 (4 HSPs)
chr7 (45-184)||(19407897-19408045)
chr7 (43-124)||(26449588-26449669)
chr7 (57-104)||(33191285-33191332)
chr7 (195-228)||(33191145-33191178)


Alignment Details
Target: chr6 (Bit Score: 134; Significance: 8e-70; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 43 - 239
Target Start/End: Complemental strand, 25167911 - 25167704
Alignment:
Q  43 gagtcctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttggata 142  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  25167911 gagtcctctttccggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctctctgccttagtgctttcagatagacttggata 25167812  T
Q  143 gtattccatctcaagcctcttgacatggttgaaagtgtcctccat-----------cctctttcccccaaaatttgaaaagaatttgcacactctttagg 231  Q
    || |||||||||||||| |||| ||||||||||||||||||||||           |||||| ||||||||||||| |||||||||||||||||||||||    
T  25167811 gtcttccatctcaagccacttgtcatggttgaaagtgtcctccatcacctcttctacctcttccccccaaaatttggaaagaatttgcacactctttagg 25167712  T
Q  232 gcaacagc 239  Q
    ||||||||    
T  25167711 gcaacagc 25167704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 121
Target Start/End: Complemental strand, 3949402 - 3949324
Alignment:
Q  43 gagtcctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagt 121  Q
    ||||||||||||||||| ||||||||||| || |||||||||| ||||| ||||||||||||||||  ||| |||||||    
T  3949402 gagtcctcattctggctcagttaaaactaaaaagcttcactttattcacctgtttcttcttctttccctctgccttagt 3949324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 4263423 - 4263481
Alignment:
Q  45 gtcctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttctt 103  Q
    |||||||||| ||||||||||||||||| |||||||| |||||| ||||| ||||||||    
T  4263423 gtcctcattccggctgagttaaaactagcaggcttcattttgtttacatgcttcttctt 4263481  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 10990092 - 10989991
Alignment:
Q  43 gagtcctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttggata 142  Q
    |||||||||||  |||| ||||||| |||||||| |||||||||||| | || | ||||||||||||  || |||||||||| ||||||  || ||||||    
T  10990092 gagtcctcatttcggctaagttaaagctagaaggattcactttgttctcttgctgcttcttctttctcgctgccttagtgctctcagatttacatggata 10989993  T
Q  143 gt 144  Q
    ||    
T  10989992 gt 10989991  T

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Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 43 - 239
Target Start/End: Complemental strand, 37050069 - 37049861
Alignment:
Q  43 gagtcctcattctggctgagttaaaactagaa-ggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttggat 141  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||    
T  37050069 gagtcctcattccggctgagttaaaactagaaaggcttcactttgttcacatgtttcttcttctttttctctgccttagtgctttcagatagacttggat 37049970  T
Q  142 agtattccatctcaagcctcttgacatggttgaaagtgtcctccat-----------cctctttcccccaaaatttgaaaagaatttgcacactctttag 230  Q
    ||| ||||||||||||||||||| ||||||||||||||||||||||           |||||| ||||||||||||| ||||||||||||||||||||||    
T  37049969 agtcttccatctcaagcctcttgtcatggttgaaagtgtcctccatcacctcttctacctcttccccccaaaatttggaaagaatttgcacactctttag 37049870  T
Q  231 ggcaacagc 239  Q
    |||| ||||    
T  37049869 ggcagcagc 37049861  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 142
Target Start/End: Complemental strand, 19852547 - 19852453
Alignment:
Q  48 ctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttggata 142  Q
    ||||||| || |||||||||||||| |||| ||||||||| ||| || |||||||||||| | ||| |||||||||| || ||||||||||||||    
T  19852547 ctcattccgggtgagttaaaactagcaggcctcactttgtgcacgtgcttcttcttctttttctctgccttagtgctctccgatagacttggata 19852453  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 142
Target Start/End: Original strand, 16593826 - 16593920
Alignment:
Q  48 ctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttggata 142  Q
    ||||||| |||| |||||||||||| |||| ||||||||| ||| || |||| ||||||| | ||| |||||||||| || ||||||||||||||    
T  16593826 ctcattccggctaagttaaaactagcaggcctcactttgtgcacgtgcttctacttctttttctctgccttagtgctctccgatagacttggata 16593920  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 24239897 - 24239993
Alignment:
Q  45 gtcctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttggatagt 144  Q
    |||||||||| |||||||||||| |||| |||||||||||| |||||    | ||||||||||||   | |||||||||| |||||||||||||||||||    
T  24239897 gtcctcattccggctgagttaaagctagtaggcttcactttattcac---ctacttcttctttctcgatgccttagtgctctcagatagacttggatagt 24239993  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 233
Target Start/End: Complemental strand, 19852355 - 19852312
Alignment:
Q  190 tctttcccccaaaatttgaaaagaatttgcacactctttagggc 233  Q
    |||| ||||||||||||| |||||||||||||||||||||||||    
T  19852355 tcttccccccaaaatttggaaagaatttgcacactctttagggc 19852312  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 16832194 - 16832270
Alignment:
Q  45 gtcctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagt 121  Q
    ||||||||||   ||||||||||  ||| ||||||||||||||||||||| ||||| ||| |||| ||| |||||||    
T  16832194 gtcctcattccaactgagttaaagttagtaggcttcactttgttcacatgcttcttattccttctctctgccttagt 16832270  T

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Target: chr2 (Bit Score: 87; Significance: 9e-42; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 46 - 188
Target Start/End: Complemental strand, 37344684 - 37344542
Alignment:
Q  46 tcctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttggatagta 145  Q
    ||||||||| ||||||||||||||||||| | |||||||||||||| ||||||||||||||||| ||| |||||||||||||| |||||||||||||||     
T  37344684 tcctcattccggctgagttaaaactagaatgattcactttgttcacctgtttcttcttctttctctctgccttagtgctttcaaatagacttggatagtc 37344585  T
Q  146 ttccatctcaagcctcttgacatggttgaaagtgtcctccatc 188  Q
    ||||||||||||||||  | ||||| ||| |||||||| ||||    
T  37344584 ttccatctcaagcctcaggtcatggctgagagtgtccttcatc 37344542  T

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Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 43 - 188
Target Start/End: Complemental strand, 31092384 - 31092239
Alignment:
Q  43 gagtcctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttggata 142  Q
    |||||||||||| |||||||||||| ||||||||| ||||||| ||||| || |||||||||||||| |||  ||||||||| |||||||||||||||||    
T  31092384 gagtcctcattccggctgagttaaatctagaaggcatcactttattcacgtgattcttcttctttctctctgtcttagtgctctcagatagacttggata 31092285  T
Q  143 gtattccatctcaagcctcttgacatggttgaaagtgtcctccatc 188  Q
    || ||||| ||||||||||||| | ||||| | |||||| ||||||    
T  31092284 gtcttccagctcaagcctcttgtcttggttaatagtgtcatccatc 31092239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 144
Target Start/End: Original strand, 14296310 - 14296411
Alignment:
Q  43 gagtcctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttggata 142  Q
    |||| ||||||| |||||||||||| |||| |||||||| ||||||||  || |||||||||||||| ||||||||||| || |||||||||||||||||    
T  14296310 gagtgctcattccggctgagttaaagctagtaggcttcattttgttcatctgcttcttcttctttctctctaccttagtactctcagatagacttggata 14296409  T
Q  143 gt 144  Q
    ||    
T  14296410 gt 14296411  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 18811759 - 18811858
Alignment:
Q  45 gtcctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttggatagt 144  Q
    |||||||||| |||||||||||| ||| || |||||||||| | ||| || |||||||||||||| ||| ||||| |||| ||| ||| |||||||||||    
T  18811759 gtcctcattccggctgagttaaagctataaagcttcactttatgcacctgcttcttcttctttctctctgccttattgctctcaaataaacttggatagt 18811858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 13502746 - 13502653
Alignment:
Q  47 cctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttgga 140  Q
    ||||||||||||||||||||| |||| || | |  ||||||||||  | |||||||||||| | ||| |||||||||| || || |||||||||    
T  13502746 cctcattctggctgagttaaagctagcagaccttcctttgttcacgagcttcttcttctttttctctgccttagtgctctccgaaagacttgga 13502653  T

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Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 45 - 188
Target Start/End: Original strand, 13062016 - 13062159
Alignment:
Q  45 gtcctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttggatagt 144  Q
    |||||||||  |||||||||||| ||| ||||| ||||||||||||| || |||||||||||| | |||  ||||||||| ||||||||||||||| |||    
T  13062016 gtcctcatttcggctgagttaaagctaaaaggcatcactttgttcacctgcttcttcttctttttctctgtcttagtgctctcagatagacttggaaagt 13062115  T
Q  145 attccatctcaagcctcttgacatggttgaaagtgtcctccatc 188  Q
     |||||||||||| |||||| ||||| ||| |||||||||||||    
T  13062116 cttccatctcaagtctcttgtcatggctgagagtgtcctccatc 13062159  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 17114768 - 17114867
Alignment:
Q  45 gtcctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttggatagt 144  Q
    |||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||| |||  ||||||||| ||||||||||||| |||||    
T  17114768 gtcctcattctggcagagttaaagctagcaggcttcactttgttcacatgtttcttcttctttctctctgtcttagtgctctcagatagacttgcatagt 17114867  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 41035079 - 41035178
Alignment:
Q  45 gtcctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttggatagt 144  Q
    |||||||||| |||||||||||| |||||||||||||   | ||||| || |||||||||||| | ||| ||||| |||| |||||||||||||||||||    
T  41035079 gtcctcattccggctgagttaaagctagaaggcttcaaaatattcacctgcttcttcttctttttctctgccttattgctctcagatagacttggatagt 41035178  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 19394181 - 19394280
Alignment:
Q  45 gtcctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttggatagt 144  Q
    ||||||||||  ||| ||||||| | |||||||||||||||| ||||||| |||||||||||| | ||| | |||||||| || ||||| ||||||||||    
T  19394181 gtcctcattccagctaagttaaagcaagaaggcttcactttgctcacatgcttcttcttctttttctctgctttagtgctctccgataggcttggatagt 19394280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 50903536 - 50903635
Alignment:
Q  45 gtcctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttggatagt 144  Q
    |||||||||  ||||||||| || |||| |||||||||||||||||| || ||||||| |||||  ||| |||||||||| || || |||||||||||||    
T  50903536 gtcctcatttcggctgagttgaagctagtaggcttcactttgttcacctgcttcttctgctttcactctgccttagtgctctctgacagacttggatagt 50903635  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 49491934 - 49492032
Alignment:
Q  45 gtcctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttggatagt 144  Q
    |||||||||| ||||||||| || |||| ||||| ||||||||||||||| ||||||| ||||||  || |||||||||| ||  | |||||||||||||    
T  49491934 gtcctcattccggctgagttgaagctagtaggct-cactttgttcacatgcttcttctgctttctccctgccttagtgctctctaacagacttggatagt 49492032  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 3374369 - 3374307
Alignment:
Q  45 gtcctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttcttt 107  Q
    |||||||||| |||||||||||| ||||  ||||||||||||||||| || ||||||||||||    
T  3374369 gtcctcattccggctgagttaaatctagccggcttcactttgttcacttgcttcttcttcttt 3374307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 14344107 - 14344068
Alignment:
Q  59 tgagttaaaactagaaggcttcactttgttcacatgtttc 98  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  14344107 tgagttaaaactagaaggcttcactttgttcacctgtttc 14344068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 188
Target Start/End: Original strand, 35526615 - 35526762
Alignment:
Q  45 gtcctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttct----gtctaccttagtgctttcagatagacttgga 140  Q
    |||||||||| ||| |||||||| ||||||||| ||||||||||||| || ||||||||||| ||    ||||   |||||||| |||||||||||||||    
T  35526615 gtcctcattccggccgagttaaagctagaaggcatcactttgttcacctgcttcttcttcttactctttgtcttaattagtgctctcagatagacttgga 35526714  T
Q  141 tagtattccatctcaagcctcttgacatggttgaaagtgtcctccatc 188  Q
    |||| ||||||||||||||||||| ||||| ||| |||||||||||||    
T  35526715 tagtcttccatctcaagcctcttgtcatggctgacagtgtcctccatc 35526762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 51524933 - 51524834
Alignment:
Q  45 gtcctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttggatagt 144  Q
    |||||||||| |||||||||||| ||| ||||| ||||||| | ||| || |||||||||||||| ||  ||||| |||| |||||||||||||||||||    
T  51524933 gtcctcattccggctgagttaaagctataaggcctcactttatgcacctgcttcttcttctttctctcagccttattgctctcagatagacttggatagt 51524834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 16893143 - 16893044
Alignment:
Q  45 gtcctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttggatagt 144  Q
    |||||||||| ||||||||| || |||| |||||||||||||||||| || ||||| | |||| | ||| |||||||||| || || |||||||||||||    
T  16893143 gtcctcattccggctgagttgaacctagtaggcttcactttgttcacctgcttcttttgctttttatctgccttagtgctctctgacagacttggatagt 16893044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 141
Target Start/End: Original strand, 26796887 - 26796970
Alignment:
Q  58 ctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttggat 141  Q
    |||||||||| || | || |||||||||||| ||||| |||||||||||||| ||| |||||||||| ||||||||||| ||||    
T  26796887 ctgagttaaagctggtagacttcactttgttaacatgcttcttcttctttctctctgccttagtgctctcagatagactcggat 26796970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 31067228 - 31067144
Alignment:
Q  58 ctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttggata 142  Q
    |||||||||| |||| | || ||||||||| |||||| |||||||||||| | ||| |||||||||| || ||||||||||||||    
T  31067228 ctgagttaaagctagcaagcctcactttgtgcacatgcttcttcttctttttctctgccttagtgctctccgatagacttggata 31067144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 161
Target Start/End: Complemental strand, 29346864 - 29346742
Alignment:
Q  45 gtcctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctt------tctgtctaccttagtgctttcagatagacttg 138  Q
    |||||||||| |||| ||||||| ||| ||||| |||| |||||||| || |||||||||||      | | |||  ||||||||| ||| |||||||||    
T  29346864 gtcctcattccggctaagttaaagctataaggcatcacgttgttcacctgcttcttcttcttcttctttttctctgtcttagtgctctcaaatagacttg 29346765  T
Q  139 gatagtattccatctcaagcctc 161  Q
    || ||| ||||||||||||||||    
T  29346764 gaaagtcttccatctcaagcctc 29346742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 233
Target Start/End: Original strand, 3395821 - 3395859
Alignment:
Q  195 cccccaaaatttgaaaagaatttgcacactctttagggc 233  Q
    ||||||||||||| ||||||| |||||||||||||||||    
T  3395821 cccccaaaatttggaaagaatctgcacactctttagggc 3395859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 232
Target Start/End: Original strand, 21845217 - 21845255
Alignment:
Q  194 tcccccaaaatttgaaaagaatttgcacactctttaggg 232  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  21845217 tcccccaaaatttggaaagaatctgcacactctttaggg 21845255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 233
Target Start/End: Complemental strand, 51524748 - 51524710
Alignment:
Q  195 cccccaaaatttgaaaagaatttgcacactctttagggc 233  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  51524748 cccccaaaatttggaaagaatttgcacactcttaagggc 51524710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 45 - 184
Target Start/End: Complemental strand, 29369169 - 29369030
Alignment:
Q  45 gtcctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttggatagt 144  Q
    ||||||||||||||| ||||||| || |||||| ||||||| ||||| || |||||||||||| | | |  ||||||||| |||||||||||||||||||    
T  29369169 gtcctcattctggctcagttaaagcttgaaggcatcactttattcacgtgcttcttcttctttatctttgtcttagtgctctcagatagacttggatagt 29369070  T
Q  145 attccatctcaagcctcttgacatggttgaaagtgtcctc 184  Q
     ||||| ||||||||||||| |||| || | |||||||||    
T  29369069 cttccagctcaagcctcttgtcatgattaatagtgtcctc 29369030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 27786842 - 27786940
Alignment:
Q  46 tcctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttggatagt 144  Q
    ||||||||| |||||||||||| ||||||||||||||||| ||||  || || ||||||||||| ||  ||||| |||| |||||||||||||||||||    
T  27786842 tcctcattccggctgagttaaagctagaaggcttcactttattcatctgcttattcttctttctctccgccttattgctctcagatagacttggatagt 27786940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 8831276 - 8831373
Alignment:
Q  45 gtcctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttggata 142  Q
    |||||||||| |||||||||||| |||| |||| ||||||||||||  || |||||||||| | | ||| |||||||||| |||||||||||||||||    
T  8831276 gtcctcattccggctgagttaaagctagcaggcctcactttgttcatgtgcttcttcttctctttctctgccttagtgctctcagatagacttggata 8831373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 140
Target Start/End: Original strand, 36206472 - 36206569
Alignment:
Q  43 gagtcctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttgga 140  Q
    |||||||||||| | || ||||||| ||||||||||||||||| ||||  || |||||||||||||| ||| |||| ||||| |||||||||||||||    
T  36206472 gagtcctcattccgactaagttaaagctagaaggcttcactttattcatttgcttcttcttctttctctctgccttggtgctctcagatagacttgga 36206569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 28225767 - 28225864
Alignment:
Q  45 gtcctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttggata 142  Q
    |||||||||| ||||||||||||  ||  |  |||||||||| ||||||| |||||||| | ||| |||||||||||||| |||||||||||||||||    
T  28225767 gtcctcattccggctgagttaaagttaacaaacttcactttgatcacatgcttcttcttttctctctctaccttagtgctctcagatagacttggata 28225864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 399808 - 399873
Alignment:
Q  79 tcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttggatagt 144  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||| ||| ||| ||| |||||||    
T  399808 tcactttgttcacatgtttcttcttctttctctctgccttagtgctctcatataaactcggatagt 399873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 233
Target Start/End: Original strand, 8831476 - 8831514
Alignment:
Q  195 cccccaaaatttgaaaagaatttgcacactctttagggc 233  Q
    ||||||||||||| ||||||| |||||||||||||||||    
T  8831476 cccccaaaatttggaaagaatctgcacactctttagggc 8831514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 184
Target Start/End: Complemental strand, 19215448 - 19215309
Alignment:
Q  45 gtcctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttggatagt 144  Q
    |||||||||| |||||||||||| ||||| ||| ||||||||||||| || ||||||||| |||| |||  ||||||||| ||| |||| ||||||||||    
T  19215448 gtcctcattcgggctgagttaaagctagacggcatcactttgttcacctgcttcttcttcattctctctgtcttagtgctctcaaataggcttggatagt 19215349  T
Q  145 attccatctcaagcctcttgacatggttgaaagtgtcctc 184  Q
     ||||||||| ||||||||  ||||| | | |||||||||    
T  19215348 cttccatctctagcctcttatcatggctaatagtgtcctc 19215309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 58 - 188
Target Start/End: Original strand, 788342 - 788472
Alignment:
Q  58 ctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttggatagtattccatctcaag 157  Q
    ||||||||||  |||||||||||| ||||||||  || |||||||||||||| ||| ||||| |||| ||| ||||||||||||||| ||| || |||||    
T  788342 ctgagttaaagttagaaggcttcattttgttcatctgcttcttcttctttctctctgccttaatgctctcaaatagacttggatagtcttctatttcaag 788441  T
Q  158 cctcttgacatggttgaaagtgtcctccatc 188  Q
    ||||||| ||||| ||| |||| ||||||||    
T  788442 cctcttgtcatggctgagagtgacctccatc 788472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 36868356 - 36868259
Alignment:
Q  47 cctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttggatagt 144  Q
    |||||||| |||||||||||| ||||||||||||||||| ||||| || |||||||||||||| || |||||| |||| ||||||  |||||||||||    
T  36868356 cctcattccggctgagttaaagctagaaggcttcactttattcacttgcttcttcttctttctctccaccttattgctctcagattaacttggatagt 36868259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 37307257 - 37307320
Alignment:
Q  81 actttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttggatagt 144  Q
    |||||||||||||| |||||||||||||| |||||||||||||| ||||| |||||| ||||||    
T  37307257 actttgttcacatgcttcttcttctttctctctaccttagtgctctcagacagacttagatagt 37307320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 144
Target Start/End: Complemental strand, 15188129 - 15188033
Alignment:
Q  45 gtcctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttggatagt 144  Q
    ||||||||||| ||||||||||| |||  ||||||||||||| ||| |||   |||||||||| | ||| | |||||||| ||| |||| ||||||||||    
T  15188129 gtcctcattctagctgagttaaagctatcaggcttcactttgctcatatg---cttcttctttttctctgcattagtgctctcatataggcttggatagt 15188033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 229
Target Start/End: Complemental strand, 19215280 - 19215245
Alignment:
Q  194 tcccccaaaatttgaaaagaatttgcacactcttta 229  Q
    |||| |||||||||||||||||||||||||||||||    
T  19215280 tccctcaaaatttgaaaagaatttgcacactcttta 19215245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 10325 - 10223
Alignment:
Q  45 gtcctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgctttcagatagacttggatagt 144  Q
    |||||||||| ||||||||||||||||| |||| ||||||||| ||| || |||||||||||| | ||| |||||||||| || |||||||||||||| |    
T  10325 gtcctcattccggctgagttaaaactagcaggcctcactttgtgcacgtgcttcttcttctttttctctgccttagtgctctccgatagacttggataat 10226  T
Q  145 att 147  Q
    |||    
T  10225 att 10223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 184
Target Start/End: Original strand, 19407897 - 19408045
Alignment:
Q  45 gtcctcattctggctgagttaaaactagaaggcttcactttgttcacatg---------tttcttcttctttctgtctaccttagtgctttcagatagac 135  Q
    |||||||||| |||||||||||| ||||||||  ||||||||||||| ||          |||||||||||| | |||   |||||||| |||||||| |    
T  19407897 gtcctcattccggctgagttaaagctagaaggaatcactttgttcacctgcttcttcttcttcttcttctttatctctgttttagtgctctcagataggc 19407996  T
Q  136 ttggatagtattccatctcaagcctcttgacatggttgaaagtgtcctc 184  Q
    ||||||||| ||||||||||||||| ||| ||||| | | |||||||||    
T  19407997 ttggatagtcttccatctcaagccttttgtcatggctaatagtgtcctc 19408045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 26449588 - 26449669
Alignment:
Q  43 gagtcctcattctggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctgtctaccttagtgct 124  Q
    |||||||||||| ||||||| | || |||| |||||||||| ||||||| || ||||||| |||||| ||| ||||||||||    
T  26449588 gagtcctcattccggctgagctgaagctagtaggcttcactctgttcacctgcttcttctgctttctctctgccttagtgct 26449669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 33191332 - 33191285
Alignment:
Q  57 gctgagttaaaactagaaggcttcactttgttcacatgtttcttcttc 104  Q
    ||||||||||| |||| ||||||||||||| |||||||||||||||||    
T  33191332 gctgagttaaagctagcaggcttcactttgctcacatgtttcttcttc 33191285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 33191178 - 33191145
Alignment:
Q  195 cccccaaaatttgaaaagaatttgcacactcttt 228  Q
    ||||||||||||||||||||| ||||||||||||    
T  33191178 cccccaaaatttgaaaagaatctgcacactcttt 33191145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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