View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1273_high_21 (Length: 256)
Name: NF1273_high_21
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1273_high_21 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 44 - 256
Target Start/End: Original strand, 39762990 - 39763202
Alignment:
| Q |
44 |
ttatcatctacataatggagcaggcatttgggttttcatcactaaacatggtggtgaggtgtggctcttcatatgctctaacagttccagtggtttccaa |
143 |
Q |
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| T |
39762990 |
ttatcatctacataatggagcaggcatttgggttttcatcactaaacatggtggtgaggtgtggctcttcatatgctctaacagttccagtggtttccaa |
39763089 |
T |
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| Q |
144 |
tctccttacatatccaggaggagccttcttgtcataagaaggagcagtgtatggatgaaccaccatgttgtatggcacataaggccatatctctgccttc |
243 |
Q |
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| T |
39763090 |
tctccttacatatccaggaggagccttcttgtcataagaaggagcagcgtatggatgaaccaccatgttgtatggcacataaggccatatctctgccttc |
39763189 |
T |
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| Q |
244 |
ttttctgtcgact |
256 |
Q |
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||| |||| |||| |
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| T |
39763190 |
tttcctgttgact |
39763202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 139 - 245
Target Start/End: Original strand, 38127516 - 38127622
Alignment:
| Q |
139 |
tccaatctccttacatatccaggaggagccttcttgtcataagaaggagcagtgtatggatgaaccaccatgttgtatggcacataaggccatatctctg |
238 |
Q |
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|||| |||||| ||||| |||||||||||||||||||||||||||| | ||| ||||| ||| |||||| ||||||||||||||||||||| || || | |
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| T |
38127516 |
tccactctcctcacataaccaggaggagccttcttgtcataagaagaaacagcatatggttgagccaccaagttgtatggcacataaggccaaatttcag |
38127615 |
T |
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| Q |
239 |
ccttctt |
245 |
Q |
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| T |
38127616 |
ccttctt |
38127622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 10653036 - 10652987
Alignment:
| Q |
52 |
tacataatggagcaggcatttgggttttcatcactaaacatggtggtgag |
101 |
Q |
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| T |
10653036 |
tacatgatggaacatgcattagggttttcatcactaaacatgttggtgag |
10652987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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