View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1273_high_25 (Length: 251)
Name: NF1273_high_25
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1273_high_25 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 2816889 - 2816668
Alignment:
| Q |
30 |
aaatatacccttcatggttcgtaactctggaactgtttagaagttaacttccaactcctgatcactcaagtttgggagttacgaccagatacaccttgaa |
129 |
Q |
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| T |
2816889 |
aaatatacccttcatggttcgtaactctggaactgtttagaagttaacttccaactcctgatcgctcaagtttgggagttacgaccagatacgccttgaa |
2816790 |
T |
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| Q |
130 |
cataatagaacacgcatgttctgtttcctcataacataacacaggatggttactttgcaggagaatgtgaaggtgttgatagaggagaagaatgaaaatg |
229 |
Q |
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|||||||||||| ||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2816789 |
cataatagaacatgcatgttctatttccccataacataacacgggatggttactttgcaggagaatgtgaaggtgttgatagaggagaagaatgaaaatg |
2816690 |
T |
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| Q |
230 |
atactctggacactttgtagat |
251 |
Q |
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|||||||||||||||||||||| |
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| T |
2816689 |
atactctggacactttgtagat |
2816668 |
T |
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