View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1273_high_4 (Length: 447)
Name: NF1273_high_4
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1273_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 35006103 - 35005732
Alignment:
| Q |
1 |
taacttgattcatatacatcaaaaatatatctcaaaattcgatcccaattccatcccgtactattgctataaaatgctataggattagtaattttaatgg |
100 |
Q |
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| T |
35006103 |
taacttgattcatatacatcaaaaatatatctcaaaattcgatcccaattccatcccgtactattgctataaaatgctataggattagtaattttaatgg |
35006004 |
T |
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| Q |
101 |
gaggacaagagtaccaaattggtcttcaagattagcatattgcatacaccaggatccaagcctctttccaaaatatgatggtgttttcatccttaaatat |
200 |
Q |
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| T |
35006003 |
taggacaagagtaccaaattggtcttcaagattagcatattgcataccccaggatccaagcctttttccaaaatatgatggtgttttcatccttaaatat |
35005904 |
T |
|
| Q |
201 |
ctaaaatatatgtttggtttagcattcggccaaacctttacaacaactctccacataggagatgttgaactatcacccatagaagacatgatattacctc |
300 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
35005903 |
ctaaaacatatgtttggtttagcattcggccaaacctttacaacaactctccacataggagatgttgaactatcacccatagaagacattatattaactc |
35005804 |
T |
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| Q |
301 |
gacatttatattttagtaaattaaatatttcagtaactttacgattaataaacttctttaattttttccctc |
372 |
Q |
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| T |
35005803 |
cacatttatattttagtaaattacatatttcagtaactttacgattaataaacttctttaattttttccctc |
35005732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 14591033 - 14591070
Alignment:
| Q |
102 |
aggacaagagtaccaaattggtcttcaagattagcata |
139 |
Q |
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|||||||||| ||||||||||||||||||| ||||||| |
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| T |
14591033 |
aggacaagaggaccaaattggtcttcaagactagcata |
14591070 |
T |
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