View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1273_low_1 (Length: 635)
Name: NF1273_low_1
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1273_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 92 - 539
Target Start/End: Complemental strand, 29632729 - 29632282
Alignment:
| Q |
92 |
atataattacataaacattaaaatnnnnnnncatagcggtcaggctatctacaaacagtgaatccaaacatgcattaagcaaaacacttaagaccacata |
191 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29632729 |
atataattacataaacattaaaataaaaaaacatggcggtcaggctatctacaaacagtgaatccaaacatgcattaagcaaaacacttaagaccacata |
29632630 |
T |
|
| Q |
192 |
aatcaataaaaaagcatctttagcacacaataaaatcaaataaaaatgaagttctaatgcaagcataattaaacagtcttccaatcatacttcatcaatc |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29632629 |
aatcaataaaaaagcatctttagcacacaataagatcaaataaaaatgaagttctaatgcaagcataattaaacagtcttccaatcatacttcatcaatc |
29632530 |
T |
|
| Q |
292 |
ttcaaatgctcaggcaccttaaatcccttcctaagcctcgaaagcatacatgtacatgttatcttaataacagtcacacatcttttgcagattactagtc |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29632529 |
ttcaaatgctcaggcaccttaaatcccttcctaagcctcgaaagcatacatgtacatgttatcttaataacagtcacacatcttttgcagattactagtc |
29632430 |
T |
|
| Q |
392 |
atggttgctgaaaagaacaggttttgccggttttctggtaagcactggaagatcactttcaactcctcctgaaaaccaacatccaagagttggtctgctt |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29632429 |
atggttgctgaaaagaacaggttttgccggttttctggtaagcactggaagatcactttcaactcctcctgaaaaccaacatccaagagttggtctgctt |
29632330 |
T |
|
| Q |
492 |
catccaagacaagaaactgcagaagcaagtgtcagtcaggtacagcat |
539 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29632329 |
catccaagacaagaaactgcagaagcaagtgtcagtcaggtacagcat |
29632282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 246 - 523
Target Start/End: Complemental strand, 29631360 - 29631087
Alignment:
| Q |
246 |
taatgcaagcataattaaacagtcttccaatcatacttcatcaatcttcaaatgctcaggcaccttaaatcccttcctaagcctcgaaagcatacatgta |
345 |
Q |
| |
|
|||||||| |||||||||||||| || |||||||||| ||||||||||||||||||| ||| ||| | |||||| |||||||||| |||||||||| |
|
|
| T |
29631360 |
taatgcaaacataattaaacagtgttggaatcatacttgatcaatcttcaaatgctcaagcaacttcag-cccttcacaagcctcgaaggcatacatgt- |
29631263 |
T |
|
| Q |
346 |
catgttatcttaataacagtcacacatc---ttttgcagattactagtcatggttgctgaaaagaacaggttttgccggttttctggtaagcactggaag |
442 |
Q |
| |
|
||||| ||||| |||| ||||| |||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
29631262 |
-----tatctcgataacggtcatacatcatctttttcagattactagtcatggtttctgaaaagaagaggttttgccggttttctggtaagcactggacg |
29631168 |
T |
|
| Q |
443 |
atcactttcaactcctcctgaaaaccaacatccaagagttggtctgcttcatccaagacaagaaactgcagaagcaagtgt |
523 |
Q |
| |
|
|| || ||||| || ||| |||||||||||||||| |||||||||||||| ||||| |||||||||||||||| ||||||| |
|
|
| T |
29631167 |
ataacattcaattcatcccgaaaaccaacatccaaaagttggtctgcttcgtccaaaacaagaaactgcagaaacaagtgt |
29631087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 350 - 519
Target Start/End: Original strand, 27662707 - 27662876
Alignment:
| Q |
350 |
ttatcttaataacagtcacacatcttttgcagattactagtcatggttgctgaaaagaacaggttttgccggttttctggtaagcactggaagatcactt |
449 |
Q |
| |
|
||||||| ||||| |||| || |||||||| ||||||||| | ||||| |||||||| ||||||||||||||||||||||||||||| || || | || |
|
|
| T |
27662707 |
ttatcttgataacgctcacgcaacttttgcaaattactagttgttgttgcagaaaagaataggttttgccggttttctggtaagcactgaaatataaatt |
27662806 |
T |
|
| Q |
450 |
tcaactcctcctgaaaaccaacatccaagagttggtctgcttcatccaagacaagaaactgcagaagcaa |
519 |
Q |
| |
|
|||| || ||||||||||||||||||| || | | |||||||||||||||||||||||||||| |||||| |
|
|
| T |
27662807 |
tcaattcatcctgaaaaccaacatccaggactcgatctgcttcatccaagacaagaaactgcaaaagcaa |
27662876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 16488450 - 16488410
Alignment:
| Q |
220 |
aataaaatcaaataaaaatgaagttctaatgcaagcataat |
260 |
Q |
| |
|
||||||||||||||||||| ||||| | ||||||||||||| |
|
|
| T |
16488450 |
aataaaatcaaataaaaataaagtttttatgcaagcataat |
16488410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University