View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1273_low_11 (Length: 439)
Name: NF1273_low_11
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1273_low_11 |
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| [»] scaffold0197 (2 HSPs) |
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Alignment Details
Target: scaffold0197 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 81 - 439
Target Start/End: Complemental strand, 6196 - 5838
Alignment:
| Q |
81 |
aatatggtgaaggaaagtggcatagggttccactattggctggtaaaagttaatcaattatttttcctttttcttgatatttctatttgtcttctctaaa |
180 |
Q |
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| T |
6196 |
aatatggtgaaggaaagtggcatagggttccactattggctggtaaaagttaatcaattatttttcctttttcttgatatttctatttgtcttctctaaa |
6097 |
T |
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| Q |
181 |
acggatatttaattacttctttgaagtatgtcatctgaggttcgatctctcacaaatatgtatggaagaacannnnnnnattgaaaaatcaatcgtcgac |
280 |
Q |
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| T |
6096 |
acggatatttaattacttctttgaagtatgtcatctgaggttcgatctctcacaaatatgtatggaagaacatttttttattgaaaaatcaattgtcgac |
5997 |
T |
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| Q |
281 |
ctcttaaaacggatcatattattttgagagattggtccatactcttgactaggaaaaccttgggttcactattaaaatgaaatcatcatgaaatgaccga |
380 |
Q |
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| T |
5996 |
ctcttaaaacggatcatattattttgagagattggtccatgctcttgactaggaaaaccttgggttcactattaaaatgaaatcatcatgaaatgaccga |
5897 |
T |
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| Q |
381 |
ctcttgaagtatgtcatctgaggttccatctctgataaatatgtatggaagaacatttt |
439 |
Q |
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| T |
5896 |
ctcttgaagtatgtcatctgaggttccatctctgataaatatgtatggaagaacatttt |
5838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 201 - 377
Target Start/End: Complemental strand, 5893 - 5716
Alignment:
| Q |
201 |
ttgaagtatgtcatctgaggttcgatctctcacaaatatgtatggaagaacannnnnnnattgaaaaatcaatcgtcgacctcttaaaacggatcatatt |
300 |
Q |
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| T |
5893 |
ttgaagtatgtcatctgaggttccatctctgataaatatgtatggaagaacatttttttattgaaaa-tcaactgtcgacctcttaaaacggatccg-tt |
5796 |
T |
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| Q |
301 |
attttgagagattggtccatactctt---gactaggaaaaccttgggttcactattaaaatgaaatcatcatgaaatgac |
377 |
Q |
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| T |
5795 |
attttgagagattggtccatactcttcttgactagaaaaaccttgggtttactattaaaatgaaatcatcatgaaatgac |
5716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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