View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1273_low_12 (Length: 436)
Name: NF1273_low_12
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1273_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 198 - 362
Target Start/End: Complemental strand, 24287476 - 24287310
Alignment:
| Q |
198 |
atgaatgtgactctgtactttataggataatcaacaaaacaataatatcttgcaaaatcatatggtttaatcatctcaacgactcctttcatacaacaat |
297 |
Q |
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| T |
24287476 |
atgaacgtgactctgtacttcataggataatcaacaaaacaataatatctcgcaaaatcatatggtttaatcatctcaaagactcctttcatacaacaat |
24287377 |
T |
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| Q |
298 |
ttttcaacaattatattgttcta--aaaattttccactgtcaaaggaacctcttctaatttttggag |
362 |
Q |
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| T |
24287376 |
tttccaacaattatattgttctaacaatattttccactgtcaaaggaacctcttctaatttttggag |
24287310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 24287588 - 24287530
Alignment:
| Q |
86 |
atggctgggattaaaaatccacttaaaatgtcacgtgcccactggtgttgttcagcgtg |
144 |
Q |
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| T |
24287588 |
atggctgggattaaaactccacttaaaatgtcacgtgcctactggtgttgttcagcgtg |
24287530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 198 - 318
Target Start/End: Complemental strand, 32993885 - 32993765
Alignment:
| Q |
198 |
atgaatgtgactctgtactttataggataatcaacaaaacaataatatcttgcaaaatcatatggtttaatcatctcaacgactcctttcatacaacaat |
297 |
Q |
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| T |
32993885 |
atgaacgtgactctgtacttcataagataatcaacaaaacaataatatctcgcaaaatcatatggtttaatcatctcaaagactcctttcatacaacaat |
32993786 |
T |
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| Q |
298 |
ttttcaacaattatattgttc |
318 |
Q |
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| T |
32993785 |
tttccaacaattatattgttc |
32993765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 32993997 - 32993939
Alignment:
| Q |
86 |
atggctgggattaaaaatccacttaaaatgtcacgtgcccactggtgttgttcagcgtg |
144 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32993997 |
atggctgggattaaaactccacttaaaatgtcacgtgcccactggtgttgttcagcgtg |
32993939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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