View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1273_low_15 (Length: 386)

Name: NF1273_low_15
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1273_low_15
NF1273_low_15
[»] chr7 (35 HSPs)
chr7 (82-349)||(6072154-6072421)
chr7 (192-270)||(30814148-30814226)
chr7 (169-285)||(36101776-36101893)
chr7 (163-283)||(40979921-40980042)
chr7 (174-284)||(45601643-45601754)
chr7 (175-284)||(40138953-40139063)
chr7 (204-256)||(26332908-26332960)
chr7 (169-284)||(27893562-27893678)
chr7 (192-264)||(31681043-31681115)
chr7 (216-284)||(35922420-35922488)
chr7 (169-264)||(43491495-43491591)
chr7 (190-264)||(15682361-15682435)
chr7 (193-287)||(33103090-33103184)
chr7 (169-250)||(40008430-40008512)
chr7 (204-254)||(46938813-46938863)
chr7 (167-283)||(27648948-27649065)
chr7 (160-264)||(28208318-28208423)
chr7 (192-284)||(28627956-28628048)
chr7 (197-284)||(1569183-1569270)
chr7 (196-283)||(38135240-38135327)
chr7 (169-251)||(48515475-48515558)
chr7 (169-254)||(2885721-2885807)
chr7 (192-282)||(43282000-43282089)
chr7 (192-254)||(44951352-44951414)
chr7 (160-264)||(38607179-38607284)
chr7 (192-276)||(42187616-42187700)
chr7 (190-270)||(2882757-2882837)
chr7 (168-231)||(7273320-7273384)
chr7 (169-264)||(12841274-12841370)
chr7 (216-276)||(21517427-21517487)
chr7 (203-283)||(24598221-24598301)
chr7 (206-254)||(44401164-44401212)
chr7 (192-264)||(45836505-45836577)
chr7 (174-221)||(46355860-46355908)
chr7 (204-284)||(47796187-47796267)
[»] chr2 (27 HSPs)
chr2 (182-284)||(31254455-31254557)
chr2 (192-284)||(8197564-8197656)
chr2 (192-284)||(8202324-8202416)
chr2 (169-284)||(33287588-33287704)
chr2 (206-284)||(19336930-19337008)
chr2 (169-270)||(43573129-43573231)
chr2 (192-284)||(38435119-38435211)
chr2 (174-244)||(17429257-17429328)
chr2 (169-254)||(9531599-9531685)
chr2 (192-265)||(3720438-3720511)
chr2 (203-284)||(26670935-26671016)
chr2 (192-284)||(9556392-9556484)
chr2 (174-285)||(13149498-13149610)
chr2 (195-234)||(20900562-20900601)
chr2 (174-251)||(10516753-10516831)
chr2 (167-264)||(28508865-28508963)
chr2 (207-281)||(37470171-37470245)
chr2 (192-254)||(45543096-45543158)
chr2 (207-284)||(1400495-1400572)
chr2 (160-264)||(3635313-3635418)
chr2 (174-254)||(11992112-11992193)
chr2 (169-253)||(12520061-12520146)
chr2 (190-283)||(38430052-38430145)
chr2 (169-264)||(25834865-25834961)
chr2 (169-264)||(30306219-30306315)
chr2 (192-264)||(39709224-39709296)
chr2 (192-264)||(45367648-45367720)
[»] chr1 (32 HSPs)
chr1 (174-275)||(25715330-25715432)
chr1 (160-284)||(5338880-5339005)
chr1 (169-254)||(28090693-28090779)
chr1 (169-284)||(8796376-8796492)
chr1 (169-276)||(41560404-41560512)
chr1 (192-276)||(39140690-39140774)
chr1 (192-284)||(52532639-52532731)
chr1 (194-264)||(12930336-12930406)
chr1 (174-254)||(21769715-21769796)
chr1 (195-276)||(27520233-27520314)
chr1 (174-254)||(37462880-37462961)
chr1 (192-284)||(3818879-3818971)
chr1 (169-276)||(4707220-4707327)
chr1 (169-264)||(15086109-15086205)
chr1 (169-264)||(25979230-25979326)
chr1 (174-245)||(28533673-28533745)
chr1 (192-284)||(32404549-32404641)
chr1 (169-264)||(38807670-38807766)
chr1 (192-284)||(38869049-38869141)
chr1 (192-284)||(40416538-40416630)
chr1 (192-255)||(27072510-27072573)
chr1 (174-284)||(52561593-52561704)
chr1 (193-283)||(8391940-8392030)
chr1 (169-246)||(44941775-44941853)
chr1 (169-221)||(4029352-4029405)
chr1 (169-233)||(37430419-37430484)
chr1 (174-254)||(50257767-50257848)
chr1 (223-284)||(51812676-51812737)
chr1 (192-256)||(2544788-2544852)
chr1 (178-284)||(29128950-29129058)
chr1 (169-276)||(34444531-34444639)
chr1 (202-282)||(40920562-40920642)
[»] chr6 (10 HSPs)
chr6 (169-284)||(34504-34620)
chr6 (174-283)||(608329-608439)
chr6 (169-254)||(12890772-12890858)
chr6 (174-254)||(30031453-30031534)
chr6 (194-270)||(31818712-31818788)
chr6 (168-270)||(12133900-12134003)
chr6 (192-258)||(7513013-7513079)
chr6 (190-244)||(9109530-9109584)
chr6 (194-246)||(7337220-7337272)
chr6 (192-284)||(8364723-8364815)
[»] chr4 (28 HSPs)
chr4 (169-284)||(55007913-55008029)
chr4 (169-247)||(45209204-45209283)
chr4 (169-284)||(25574991-25575107)
chr4 (174-284)||(26024854-26024965)
chr4 (170-252)||(49686892-49686975)
chr4 (174-283)||(1793630-1793740)
chr4 (169-264)||(28236369-28236465)
chr4 (192-279)||(31339696-31339783)
chr4 (160-246)||(35690476-35690563)
chr4 (192-284)||(26037528-26037620)
chr4 (202-254)||(30480320-30480372)
chr4 (192-284)||(40018212-40018304)
chr4 (169-284)||(45204839-45204954)
chr4 (192-284)||(51421897-51421989)
chr4 (169-244)||(56375497-56375573)
chr4 (169-231)||(31961265-31961328)
chr4 (196-275)||(34379579-34379657)
chr4 (174-284)||(55388215-55388326)
chr4 (175-264)||(7947124-7947214)
chr4 (192-254)||(20601675-20601737)
chr4 (210-276)||(40420255-40420321)
chr4 (192-270)||(56439594-56439672)
chr4 (169-264)||(6957785-6957881)
chr4 (175-270)||(29209180-29209276)
chr4 (193-285)||(31403058-31403150)
chr4 (169-284)||(37488258-37488374)
chr4 (203-279)||(48154881-48154957)
chr4 (192-244)||(50967051-50967103)
[»] chr8 (30 HSPs)
chr8 (192-284)||(16035750-16035842)
chr8 (174-254)||(35914605-35914686)
chr8 (192-284)||(490502-490594)
chr8 (169-284)||(30198265-30198381)
chr8 (169-284)||(42584526-42584641)
chr8 (202-284)||(30783075-30783157)
chr8 (195-284)||(23023392-23023481)
chr8 (192-284)||(21425213-21425305)
chr8 (202-281)||(43904698-43904777)
chr8 (192-280)||(24399812-24399900)
chr8 (169-236)||(35323988-35324056)
chr8 (176-238)||(18741845-18741908)
chr8 (176-238)||(18746809-18746872)
chr8 (209-284)||(30559860-30559935)
chr8 (169-238)||(1928586-1928656)
chr8 (192-234)||(14742861-14742903)
chr8 (190-264)||(29735994-29736068)
chr8 (192-246)||(30689940-30689994)
chr8 (169-222)||(39953263-39953317)
chr8 (193-282)||(2518422-2518511)
chr8 (174-238)||(18473976-18474041)
chr8 (207-276)||(31715995-31716064)
chr8 (235-284)||(35643672-35643721)
chr8 (195-284)||(38391919-38392008)
chr8 (195-284)||(39967525-39967614)
chr8 (174-246)||(45419440-45419513)
chr8 (169-284)||(23492201-23492317)
chr8 (192-256)||(32931155-32931219)
chr8 (169-244)||(36545356-36545432)
chr8 (216-264)||(43013239-43013287)
[»] chr5 (26 HSPs)
chr5 (169-284)||(7678645-7678760)
chr5 (176-284)||(14667938-14668047)
chr5 (169-284)||(7359260-7359375)
chr5 (194-284)||(683726-683816)
chr5 (169-255)||(6788263-6788349)
chr5 (169-284)||(28049-28165)
chr5 (196-284)||(418061-418149)
chr5 (192-284)||(9235214-9235305)
chr5 (195-283)||(14911340-14911428)
chr5 (192-264)||(15252767-15252839)
chr5 (196-280)||(20367064-20367148)
chr5 (192-284)||(27998608-27998700)
chr5 (192-284)||(30588614-30588706)
chr5 (169-254)||(11675727-11675813)
chr5 (169-254)||(18855804-18855890)
chr5 (192-276)||(1275439-1275523)
chr5 (192-284)||(12576883-12576975)
chr5 (192-264)||(20456960-20457032)
chr5 (166-221)||(36551376-36551432)
chr5 (192-264)||(43557856-43557928)
chr5 (192-254)||(26884712-26884774)
chr5 (169-221)||(4653482-4653535)
chr5 (193-254)||(38657040-38657101)
chr5 (168-284)||(38684647-38684764)
chr5 (192-264)||(38685154-38685226)
chr5 (169-284)||(43475406-43475522)
[»] chr3 (25 HSPs)
chr3 (197-284)||(36304133-36304220)
chr3 (174-278)||(32170578-32170683)
chr3 (174-284)||(49042103-49042215)
chr3 (160-254)||(52927838-52927933)
chr3 (169-283)||(53519748-53519863)
chr3 (169-282)||(311308-311422)
chr3 (175-253)||(23534576-23534654)
chr3 (169-246)||(46148233-46148311)
chr3 (169-254)||(48508432-48508518)
chr3 (174-283)||(49841784-49841894)
chr3 (174-254)||(40991628-40991709)
chr3 (197-254)||(54365003-54365060)
chr3 (190-254)||(6780684-6780748)
chr3 (174-284)||(15296074-15296185)
chr3 (174-264)||(38060901-38060992)
chr3 (216-270)||(55384065-55384119)
chr3 (202-255)||(5852337-5852390)
chr3 (174-246)||(30797826-30797899)
chr3 (193-246)||(38850326-38850379)
chr3 (203-264)||(48953453-48953514)
chr3 (169-264)||(5169019-5169115)
chr3 (194-254)||(42510041-42510101)
chr3 (169-236)||(49503567-49503635)
chr3 (193-233)||(49888405-49888445)
chr3 (169-244)||(52139007-52139083)
[»] scaffold0024 (2 HSPs)
scaffold0024 (174-264)||(82905-82996)
scaffold0024 (193-254)||(48140-48201)
[»] scaffold0491 (1 HSPs)
scaffold0491 (176-238)||(3650-3713)
[»] scaffold0050 (1 HSPs)
scaffold0050 (192-252)||(58249-58309)


Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 82 - 349
Target Start/End: Complemental strand, 6072421 - 6072154
Alignment:
Q  82 aatattccatacatttaaagaattcattaaacaattttgaagctagatttcaaaatattaaacttcccatatgacattaacaactaaaacagcaacaacc 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6072421 aatattccatacatttaaagaattcattaaacaattttgaagctagatttcaaaatattaaacttcccatatgacattaacaactacaacagcaacaacc 6072322  T
Q  182 aagtcttactcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatct 281  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6072321 aagtcttactcactaagtgtggtcagctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatct 6072222  T
Q  282 ttcaaactacacatccgagaaattcaaactaaaatctaaaaacaaccaacactccaaattcaaaagga 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6072221 ttcaaactacacatccgagaaattcaaactaaaatctaaaaacaaccaacactccaaattcaaaagga 6072154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 192 - 270
Target Start/End: Original strand, 30814148 - 30814226
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaa 270  Q
    ||||||||| ||||||||||||| |||||| ||||| ||||| |||| ||||||| ||||||||||| |||||||||||    
T  30814148 cactaagtggggtcggctacatggatcaaattacgtgataatgttctatcataaaacatatttcgatccaactaattaa 30814226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 169 - 285
Target Start/End: Original strand, 36101776 - 36101893
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 267  Q
    |||| ||||||||||| |||| | ||||||||| ||||  ||||||| |||||| ||||||||||| |||| ||||||| ||||||| ||| ||||| ||    
T  36101776 aacaacaacaaccaagccttatcccactaagtggggtcaactacatggatcaaattacgtcataatgttctatcataaaccatattttgatccaactcat 36101875  T
Q  268 taaactctagatctttca 285  Q
    ||| || || ||||||||    
T  36101876 taatctataaatctttca 36101893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 163 - 283
Target Start/End: Original strand, 40979921 - 40980042
Alignment:
Q  163 aactaaaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattca 261  Q
    |||||| ||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||| | |||| ||||||| ||||||| ||| ||    
T  40979921 aactaatacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccatagtgttctatcataaaccatatttggatcca 40980020  T
Q  262 actaattaaactctagatcttt 283  Q
    ||| ||| | ||||| ||||||    
T  40980021 actcattgacctctaaatcttt 40980042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 284
Target Start/End: Complemental strand, 45601754 - 45601643
Alignment:
Q  174 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 272  Q
    ||||||||||| |||| | ||||||||| | || |||||||| |||||| |||  |||| | |||| ||||||||||||||| ||| ||||| ||||| |    
T  45601754 caacaaccaagccttatcccactaagtgagttcagctacatggatcaaattacaccatagtgttctatcataaatcatattttgatccaactcattaatc 45601655  T
Q  273 tctagatctttc 284  Q
    ||||||||||||    
T  45601654 tctagatctttc 45601643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 284
Target Start/End: Original strand, 40138953 - 40139063
Alignment:
Q  175 aacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaact 273  Q
    |||| |||||||||| | ||||||||| |||| |||||||| ||||||  ||||||||||||||| |||||  ||||||||| ||  |||  ||||| ||    
T  40138953 aacagccaagtcttatcgcactaagtggggtctgctacatggatcaaatgacgtcataatattctatcatatgtcatatttctatcaaacgcattaatct 40139052  T
Q  274 ctagatctttc 284  Q
    |||||||||||    
T  40139053 ctagatctttc 40139063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 26332908 - 26332960
Alignment:
Q  204 tcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcg 256  Q
    ||||||||||| |||||| |||||||||||||||| ||||||| |||||||||    
T  26332908 tcggctacatggatcaaattacgtcataatattctatcataaaccatatttcg 26332960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 169 - 284
Target Start/End: Original strand, 27893562 - 27893678
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 267  Q
    |||| ||||||||||| |||| | ||||||||  ||||||||||||| |||||| || | |||||| |||| ||||||| ||||||||| | || || ||    
T  27893562 aacaacaacaaccaagccttatcgcactaagtagggtcggctacatgaatcaaattatgccataatgttctatcataaaacatatttcggtccagctcat 27893661  T
Q  268 taaactctagatctttc 284  Q
    ||| ||||| |||||||    
T  27893662 taatctctaaatctttc 27893678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 31681043 - 31681115
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 264  Q
    ||||||||| ||||||||||||| |||||| ||||||||| |||||| ||||||  ||||||| ||| |||||    
T  31681043 cactaagtggggtcggctacatggatcaaattacgtcatagtattctatcataagccatatttggatccaact 31681115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 35922488 - 35922420
Alignment:
Q  216 atcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    |||||| || |||||||| |||| ||||||||||||||| ||||||||| ||||| ||||| |||||||    
T  35922488 atcaaattaggtcataatgttctatcataaatcatatttagattcaactcattaacctctaaatctttc 35922420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 169 - 264
Target Start/End: Complemental strand, 43491591 - 43491495
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 264  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| || ||| ||| ||||| | |||| ||||||||||||||| ||| |||||    
T  43491591 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatgaaattacatcatagtgttctatcataaatcatatttggatccaact 43491495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 264
Target Start/End: Complemental strand, 15682435 - 15682361
Alignment:
Q  190 ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 264  Q
    ||||||||||| ||| ||||||||| |||||| |||| |||| | |||| ||||||||||||||| ||| |||||    
T  15682435 ctcactaagtggggttggctacatggatcaaagtacgccatagtgttctatcataaatcatatttggatccaact 15682361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 287
Target Start/End: Complemental strand, 33103184 - 33103090
Alignment:
Q  193 actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttcaaa 287  Q
    |||||||| ||||||||||||| |||||| ||||  ||  | |||| ||||||| |||||| |||||||||| ||||| |||||  |||||||||    
T  33103184 actaagtggggtcggctacatggatcaaattacgctatggtgttctatcataaaccatattccgattcaactcattaatctctaagtctttcaaa 33103090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 40008430 - 40008512
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcat 250  Q
    |||| |||||||||||||||| |||| |||||| |||| |||||||| ||||||| ||| |||||| |||| ||||| |||||    
T  40008430 aacaacaacaaccaagtcttatctcattaagtgaggtcagctacatggatcaaacaacgacataatgttctatcatatatcat 40008512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 46938813 - 46938863
Alignment:
Q  204 tcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 254  Q
    |||||||||||||||||| |||||||||||||| | ||||||| |||||||    
T  46938813 tcggctacatgtatcaaattacgtcataatattatatcataaaccatattt 46938863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 283
Target Start/End: Complemental strand, 27649065 - 27648948
Alignment:
Q  167 aaaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaacta 265  Q
    |||||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| || | | |||| ||||||| || |||| ||| |||||     
T  27649065 aaaacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccacagtgttctatcataaaccaaatttggatccaactc 27648966  T
Q  266 attaaactctagatcttt 283  Q
    ||| | ||||| ||||||    
T  27648965 attgacctctaaatcttt 27648948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 264
Target Start/End: Original strand, 28208318 - 28208423
Alignment:
Q  160 aacaactaaaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgat 258  Q
    |||||| | |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||  ||| |||| | |||| ||||||| ||||||| |||    
T  28208318 aacaacaacaacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcataaaccatatttggat 28208417  T
Q  259 tcaact 264  Q
     |||||    
T  28208418 ccaact 28208423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 284
Target Start/End: Original strand, 28627956 - 28628048
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    |||||||||  |||||||||||| |||||| |||| |||||| |||| ||||||| || ||||  || ||||| ||||| ||||| |||||||    
T  28627956 cactaagtggagtcggctacatggatcaaattacgccataatgttctatcataaaccacatttgcatccaactcattaatctctaaatctttc 28628048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 284
Target Start/End: Complemental strand, 1569270 - 1569183
Alignment:
Q  197 agtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    |||| ||||| ||||||  |||||| |||| | |||| |||| ||||||| ||||||| ||| ||||| ||||| |||||||||||||    
T  1569270 agtggggtcgactacatcgatcaaattacgccgtaatgttctatcataaaccatattttgatccaactcattaatctctagatctttc 1569183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 283
Target Start/End: Original strand, 38135240 - 38135327
Alignment:
Q  196 aagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatcttt 283  Q
    ||||| |||| |||| ||| |||||| |||| ||||||||||| ||||||  ||||||||| | ||||| ||||| ||||| ||||||    
T  38135240 aagtggggtcagctagatggatcaaattacgccataatattctatcataacccatatttcggtccaactcattaatctctaaatcttt 38135327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 251
Target Start/End: Complemental strand, 48515558 - 48515475
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcata 251  Q
    |||| ||| |||||||||||| | ||||||||| ||||||||||| | |||||| ||||||||| | | || ||||||||||||    
T  48515558 aacaacaaaaaccaagtcttatcccactaagtggggtcggctacacggatcaaattacgtcatagtgtactatcataaatcata 48515475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 254
Target Start/End: Original strand, 2885721 - 2885807
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 254  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||  |||| | |||| ||||||| |||||||    
T  2885721 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacaccatagtgttctatcataaaccatattt 2885807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 282
Target Start/End: Complemental strand, 43282089 - 43282000
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctt 282  Q
    ||||||||| ||||||||| ||  |||||| |||| |||| | || ||||||||| ||||||| ||| ||||| ||||| |||||||||||    
T  43282089 cactaagtgaggtcggctagatagatcaaattacgccata-tgttttgtcataaaccatattttgatccaactcattaatctctagatctt 43282000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 254
Target Start/End: Complemental strand, 44951414 - 44951352
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 254  Q
    |||||||| | |||||||||||| |||||| ||||||||| | |||| |||||||| ||||||    
T  44951414 cactaagtattgtcggctacatggatcaaattacgtcatagtgttctatcataaataatattt 44951352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 264
Target Start/End: Complemental strand, 38607284 - 38607179
Alignment:
Q  160 aacaactaaaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgat 258  Q
    |||||| | |||| ||||||||||| |||| | |||||||||  |||||||||||| ||||||| ||| |||| | |||| ||| ||| ||||||| |||    
T  38607284 aacaacaacaacaacaacaaccaagccttaacccactaagtggagtcggctacatggatcaaacgacgccatagtgttctatcaaaaaccatatttggat 38607185  T
Q  259 tcaact 264  Q
     |||||    
T  38607184 ccaact 38607179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 276
Target Start/End: Complemental strand, 42187700 - 42187616
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcat-aatattctgtcataaatcatatttcgattcaactaattaaactcta 276  Q
    ||||||||| ||||||||||||| |||||| |||| ||| ||| |||| ||||||| || |||| ||| ||||||||||| |||||    
T  42187700 cactaagtggggtcggctacatggatcaaattacgccataaatgttctatcataaacca-atttggatccaactaattaatctcta 42187616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 270
Target Start/End: Original strand, 2882757 - 2882837
Alignment:
Q  190 ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaa 270  Q
    ||||||||||| |||| |||| ||  |||||| |||| |||||| |||| ||||||| ||| ||||||| ||||| |||||    
T  2882757 ctcactaagtgaggtcagctaaatagatcaaattacgccataatgttctatcataaaccatgtttcgatccaactcattaa 2882837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 7273384 - 7273320
Alignment:
Q  168 aaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcata 231  Q
    ||||| |||||| |||| |||| | ||||||||| ||||||||||||| |||||| |||||||||    
T  7273384 aaacaacaacaatcaagccttatcccactaagtggggtcggctacatggatcaaattacgtcata 7273320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 264
Target Start/End: Original strand, 12841274 - 12841370
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 264  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||  ||| |||| | |||| ||||||| || |||| ||| |||||    
T  12841274 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcataaaccaaatttggatacaact 12841370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 21517427 - 21517487
Alignment:
Q  216 atcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactcta 276  Q
    |||||| ||||||||||| || | ||||||||||||||| ||| ||||| ||||| |||||    
T  21517427 atcaaattacgtcataatgttatatcataaatcatatttggatccaacttattaatctcta 21517487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 283
Target Start/End: Original strand, 24598221 - 24598301
Alignment:
Q  203 gtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatcttt 283  Q
    |||||||||||| ||||||  | | || |||||||| ||| ||||||||||| ||||||||| ||| | ||||| ||||||    
T  24598221 gtcggctacatggatcaaatgatgccaaaatattctatcaaaaatcatatttggattcaactcattgacctctaaatcttt 24598301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 44401164 - 44401212
Alignment:
Q  206 ggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 254  Q
    ||||||||| |||||| ||||||||||| |||| ||||||| |||||||    
T  44401164 ggctacatggatcaaattacgtcataatgttctatcataaaacatattt 44401212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 45836505 - 45836577
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 264  Q
    ||||||||| ||||||||||||| ||||||  ||| |||| | |||| ||||||| ||||||| ||| |||||    
T  45836505 cactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcataaaccatatttggatccaact 45836577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 46355860 - 46355908
Alignment:
Q  174 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaa 221  Q
    ||||||||||| |||| ||||||||||| ||||||||||||| ||||||    
T  46355860 caacaaccaagccttatctcactaagtggggtcggctacatggatcaaa 46355908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 284
Target Start/End: Original strand, 47796187 - 47796267
Alignment:
Q  204 tcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    |||||| |||| |||||| |||| ||||||||||| ||||||| ||||||||  | ||||| |||||  |||| |||||||    
T  47796187 tcggctgcatggatcaaattacgccataatattctatcataaaccatatttcagtccaacttattaatttctaaatctttc 47796267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 182 - 284
Target Start/End: Complemental strand, 31254557 - 31254455
Alignment:
Q  182 aagtcttactcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatct 281  Q
    ||||||||  ||||||||  ||||| ||||||||| ||||||  | |||||| ||||||||||||||||||||| |||||||| ||||| ||||||||||    
T  31254557 aagtcttatccactaagttgggtcgactacatgtaccaaactgtgccataatgttctgtcataaatcatatttctattcaactcattaatctctagatct 31254458  T
Q  282 ttc 284  Q
    |||    
T  31254457 ttc 31254455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 192 - 284
Target Start/End: Original strand, 8197564 - 8197656
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    ||||||||  ||||||||||||| ||||||| ||| ||||||||||| ||||| |||||||||| || ||||| ||||| || ||||||||||    
T  8197564 cactaagtagggtcggctacatggatcaaacgacgccataatattctatcatatatcatatttctatccaactcattaatctttagatctttc 8197656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 192 - 284
Target Start/End: Original strand, 8202324 - 8202416
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    ||||||||  ||||||||||||| ||||||| ||| ||||||||||| ||||| |||||||||| || ||||| ||||| || ||||||||||    
T  8202324 cactaagtagggtcggctacatggatcaaacgacgccataatattctatcatatatcatatttctatccaactcattaatctttagatctttc 8202416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 33287704 - 33287588
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 267  Q
    |||| |||||||||||||||  | |||||||||  || ||||||| | ||||||||| |||||||| |||| ||||||| |||||||||||  |||| ||    
T  33287704 aacaacaacaaccaagtcttgtcccactaagtggagttggctacaaggatcaaactatgtcataatgttctatcataaaccatatttcgatctaactcat 33287605  T
Q  268 taaactctagatctttc 284  Q
    |||  ||||||||||||    
T  33287604 taatttctagatctttc 33287588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 206 - 284
Target Start/End: Original strand, 19336930 - 19337008
Alignment:
Q  206 ggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    ||||||||| |||||| |||| |||||| |||| ||||||| ||||||||||| ||||| ||||| ||||| |||||||    
T  19336930 ggctacatggatcaaattacgccataatgttctatcataaaccatatttcgatccaactcattaatctctaaatctttc 19337008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 270
Target Start/End: Original strand, 43573129 - 43573231
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 267  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||||  |||  ||||||||||||||| ||| ||||| ||    
T  43573129 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccataacgttcgatcataaatcatatttggatccaactcat 43573228  T
Q  268 taa 270  Q
    |||    
T  43573229 taa 43573231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 192 - 284
Target Start/End: Complemental strand, 38435211 - 38435119
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    ||||||||| | ||||||||||| |||||| |||| |||||| |||  ||||||| || |||||||| ||||  ||||| |||||||||||||    
T  38435211 cactaagtgggatcggctacatggatcaaattacgccataatgttcaatcataaaccaaatttcgatccaacacattaatctctagatctttc 38435119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 17429328 - 17429257
Alignment:
Q  174 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcata 244  Q
    ||||||||||| |||| ||||||||||| ||||||||||||| |||||| || |||||||| |||| |||||    
T  17429328 caacaaccaagccttatctcactaagtggggtcggctacatgaatcaaattatgtcataatgttctatcata 17429257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 254
Target Start/End: Original strand, 9531599 - 9531685
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 254  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||||| |||  ||||||| |||||||    
T  9531599 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccataatgttccatcataaaccatattt 9531685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 265
Target Start/End: Original strand, 3720438 - 3720511
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaacta 265  Q
    ||||||||| ||||||||||||| |||||| |||  |||||| |||| ||||||| ||| ||||||| ||||||    
T  3720438 cactaagtggggtcggctacatggatcaaattacaccataatgttctatcataaaccatttttcgatccaacta 3720511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 26671016 - 26670935
Alignment:
Q  203 gtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    |||||||||||| |||||| |||  ||| ||||||| ||||||||||||||| | | ||||| ||||| ||||| |||||||    
T  26671016 gtcggctacatggatcaaattacaccattatattctatcataaatcatattttggtccaactcattaatctctaaatctttc 26670935  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 284
Target Start/End: Original strand, 9556392 - 9556484
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    |||||||||  ||||||||||||||||||| |||  | |||| |||| ||||||| ||||| | ||| ||||| ||||| | |||||||||||    
T  9556392 cactaagtggagtcggctacatgtatcaaattacaccctaatgttctatcataaaccatatcttgatccaactcattaatcactagatctttc 9556484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 285
Target Start/End: Complemental strand, 13149610 - 13149498
Alignment:
Q  174 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 272  Q
    |||||||||||||||| |||| ||| || | ||||||| ||| |||||| || |||||||| |||| |||| ||  |||||| ||||| ||| ||||| |    
T  13149610 caacaaccaagtcttatctcattaattgagatcggctatatggatcaaattatgtcataatgttctatcatcaacgatatttggattctactcattaacc 13149511  T
Q  273 tctagatctttca 285  Q
    |||| ||||||||    
T  13149510 tctaaatctttca 13149498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 20900601 - 20900562
Alignment:
Q  195 taagtgtggtcggctacatgtatcaaactacgtcataata 234  Q
    |||||| ||||||||||||| |||||||||||||||||||    
T  20900601 taagtgaggtcggctacatggatcaaactacgtcataata 20900562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 10516753 - 10516831
Alignment:
Q  174 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcata 251  Q
    ||||||||||| |||| | ||||||||| | || |||||||| |||||| |||| ||||||||| | ||||||||||||    
T  10516753 caacaaccaagccttatcccactaagtgagatcagctacatggatcaaattacgccataatattttatcataaatcata 10516831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 264
Target Start/End: Complemental strand, 28508963 - 28508865
Alignment:
Q  167 aaaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 264  Q
    |||||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||  ||| |||| | |||| ||||||| || |||| ||| |||||    
T  28508963 aaaacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcataaaccaaatttggatccaact 28508865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 37470171 - 37470245
Alignment:
Q  207 gctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatct 281  Q
    |||||||| ||||||||||  |||||| |||| |||||   ||||||||||| ||||| ||||| ||||||||||    
T  37470171 gctacatggatcaaactacaccataatgttctatcatatgccatatttcgatccaactcattaatctctagatct 37470245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 254
Target Start/End: Original strand, 45543096 - 45543158
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 254  Q
    ||||||||| ||||||||||||  |||||| |||| |||||| |||| ||||||| |||||||    
T  45543096 cactaagtggggtcggctacatagatcaaagtacgccataatgttctatcataaaccatattt 45543158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 1400495 - 1400572
Alignment:
Q  207 gctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    |||||||  |||||| |||| ||||||||| | || |||||||||||| ||||||||| |||||  |||| |||||||    
T  1400495 gctacattgatcaaattacgccataatattttatcgtaaatcatatttagattcaactcattaacttctaaatctttc 1400572  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 264
Target Start/End: Original strand, 3635313 - 3635418
Alignment:
Q  160 aacaactaaaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgat 258  Q
    |||||| | |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||  ||| |||| | |||| ||| ||| ||||||| |||    
T  3635313 aacaacaacaacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcaaaaaccatatttggat 3635412  T
Q  259 tcaact 264  Q
     |||||    
T  3635413 ccaact 3635418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 254
Target Start/End: Original strand, 11992112 - 11992193
Alignment:
Q  174 caacaaccaagtcttactc-actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 254  Q
    ||||||||||| |||| || |||||||| |||| |||||||| ||||||  ||| |||||| |||| ||| |||||||||||    
T  11992112 caacaaccaagccttattccactaagtggggtcagctacatggatcaaataacgccataatgttctatcaaaaatcatattt 11992193  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 253
Target Start/End: Original strand, 12520061 - 12520146
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatt 253  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||| | || | ||||||| ||||||    
T  12520061 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccatagtgttttatcataaaccatatt 12520146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 283
Target Start/End: Complemental strand, 38430145 - 38430052
Alignment:
Q  190 ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatcttt 283  Q
    ||||||||||| ||||||||||||| ||||||  ||| |||| | |||| ||| ||| ||||||| ||| ||||| ||| | ||||| ||||||    
T  38430145 ctcactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcaaaaaccatatttggatccaactcattgacctctaaatcttt 38430052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 264
Target Start/End: Complemental strand, 25834961 - 25834865
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 264  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||  ||| || | | |||| ||||||| ||||||| ||| |||||    
T  25834961 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccacagtgttctatcataaaccatatttggatccaact 25834865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 264
Target Start/End: Complemental strand, 30306315 - 30306219
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 264  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||  ||| |||| | |||| ||||||| || |||| ||| |||||    
T  30306315 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcataaaccaaatttggatccaact 30306219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 39709224 - 39709296
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 264  Q
    ||||||||| ||||||||||||| |||||| |||| |||| | |||  ||||||| ||||||| ||| |||||    
T  39709224 cactaagtggggtcggctacatggatcaaattacgccatagtgttcaatcataaaccatattttgatccaact 39709296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 45367648 - 45367720
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 264  Q
    ||||||||| ||||||| ||||| ||||||  |||||||| | |||| ||| ||||||||||| ||| |||||    
T  45367648 cactaagtggggtcggcgacatggatcaaatgacgtcatagtgttctatcaaaaatcatatttggatccaact 45367720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 174 - 275
Target Start/End: Original strand, 25715330 - 25715432
Alignment:
Q  174 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 272  Q
    ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| ||||||||||| ||||||| ||||||||| ||||||| ||||| |    
T  25715330 caacaaccaagccttatcccactaagtgaggtcggctacatggatcaaattacgccataatattctatcataaaccatatttcggttcaactcattaatc 25715429  T
Q  273 tct 275  Q
    |||    
T  25715430 tct 25715432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 160 - 284
Target Start/End: Complemental strand, 5339005 - 5338880
Alignment:
Q  160 aacaactaaaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgat 258  Q
    |||||| | |||| |||||||| || |||| ||||||||||| ||| ||||||||| |||||| |||| |||||| |||| | |||||||| ||||||||    
T  5339005 aacaacaacaacaacaacaaccgagccttatctcactaagtgaggttggctacatggatcaaattacgccataatgttctataataaatcacatttcgat 5338906  T
Q  259 tcaactaattaaactctagatctttc 284  Q
     ||||| ||||| |||||||||||||    
T  5338905 ccaactcattaatctctagatctttc 5338880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 254
Target Start/End: Original strand, 28090693 - 28090779
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 254  Q
    |||| |||||||||||||||| | ||||||||| ||||||||||||| |||||| |||| |||||| |||| ||||||| |||||||    
T  28090693 aacaacaacaaccaagtcttatcccactaagtggggtcggctacatggatcaaattacgccataatgttctatcataaaccatattt 28090779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 8796492 - 8796376
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 267  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| || ||| |||| |||||| |||| ||||||| |||||||| || ||| | ||    
T  8796492 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggattaaattacgccataatgttctatcataaaccatatttcaatccaagtcat 8796393  T
Q  268 taaactctagatctttc 284  Q
    |||  ||||||||||||    
T  8796392 taatatctagatctttc 8796376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 169 - 276
Target Start/End: Complemental strand, 41560512 - 41560404
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 267  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||||| |||| ||||||  ||||||| ||| ||||| ||    
T  41560512 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccataatgttctatcataacccatatttggatccaactcat 41560413  T
Q  268 taaactcta 276  Q
    ||| |||||    
T  41560412 taatctcta 41560404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 192 - 276
Target Start/End: Complemental strand, 39140774 - 39140690
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactcta 276  Q
    ||||||||| ||||||||||||| |||||| |||| |||||| |||| ||  ||| ||||||| ||| ||||||||||| |||||    
T  39140774 cactaagtggggtcggctacatgaatcaaattacgccataatgttctatctgaaaccatatttggatccaactaattaacctcta 39140690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 192 - 284
Target Start/End: Original strand, 52532639 - 52532731
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    ||||||||| ||||||||||||| |||||| |||| |||||| |||| ||||||| ||||||| | | ||||| |||||  |||| |||||||    
T  52532639 cactaagtggggtcggctacatgaatcaaattacgccataatgttctatcataaaccatattttgttccaactcattaatttctaaatctttc 52532731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 264
Target Start/End: Original strand, 12930336 - 12930406
Alignment:
Q  194 ctaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 264  Q
    ||||||| ||| ||||||| | |||||| ||||||||||| |||| ||||||||||||||| ||| |||||    
T  12930336 ctaagtggggttggctacacggatcaaattacgtcataatcttctatcataaatcatatttggatccaact 12930406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 254
Target Start/End: Original strand, 21769715 - 21769796
Alignment:
Q  174 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 254  Q
    ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||||| |||| ||| ||| |||||||    
T  21769715 caacaaccaagccttatcacactaagtggggtcggctacatggatcaaattacgccataatgttctatcacaaaccatattt 21769796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 195 - 276
Target Start/End: Original strand, 27520233 - 27520314
Alignment:
Q  195 taagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactcta 276  Q
    |||||| ||||| ||||||| |||||| ||| ||||||| |||| ||||||||||||||| ||| || || ||||| |||||    
T  27520233 taagtgaggtcgactacatgaatcaaattacatcataatgttctatcataaatcatatttggatccagctcattaatctcta 27520314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 254
Target Start/End: Original strand, 37462880 - 37462961
Alignment:
Q  174 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 254  Q
    ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||||| |||| | ||||| |||||||    
T  37462880 caacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccataatgttctatgataaaccatattt 37462961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 284
Target Start/End: Original strand, 3818879 - 3818971
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    |||||||||  |||||||||||| ||||||   || |||||| |||  ||||||| |||||||| |||||||| ||||| ||||| |||||||    
T  3818879 cactaagtgcagtcggctacatggatcaaatggcgacataatgttccatcataaaccatatttctattcaactcattaatctctaaatctttc 3818971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 276
Target Start/End: Original strand, 4707220 - 4707327
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 267  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||| | |||| ||||||| || |||| ||| ||||| ||    
T  4707220 aacaacaacaaccaagccttatcccactaagtggggtcggctacatg-atcaaattacgccatagtgttctatcataaaccaaatttggatccaactcat 4707318  T
Q  268 taaactcta 276  Q
    ||| |||||    
T  4707319 taacctcta 4707327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 264
Target Start/End: Complemental strand, 15086205 - 15086109
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 264  Q
    |||| ||||||||||| |||| | ||||||||| ||| ||||||||| ||||||  |||||||| | |||| ||| ||||||||||| ||| |||||    
T  15086205 aacaacaacaaccaagccttatcccactaagtggggttggctacatggatcaaatgacgtcatagtgttctatcaaaaatcatatttggatccaact 15086109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 264
Target Start/End: Original strand, 25979230 - 25979326
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 264  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||  ||| |||| | |||| ||||||| ||||||| ||| |||||    
T  25979230 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcataaaccatatttggatccaact 25979326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 28533745 - 28533673
Alignment:
Q  174 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataa 245  Q
    |||||||||||||||| | ||||||||| ||||||||||||| ||||||  |||||||| | |||| ||||||    
T  28533745 caacaaccaagtcttatcccactaagtggggtcggctacatggatcaaatgacgtcatagtgttctatcataa 28533673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 284
Target Start/End: Original strand, 32404549 - 32404641
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    ||||||||| ||||||||||||| |||||| |||| ||| || || | ||||||| ||| ||| |||| |||| ||||| ||||| |||||||    
T  32404549 cactaagtggggtcggctacatggatcaaattacgccattatgttatatcataaaccatgtttggatttaactcattaatctctaaatctttc 32404641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 264
Target Start/End: Original strand, 38807670 - 38807766
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 264  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| | |||| |||| |||| | |||| ||||||| ||||||| ||| |||||    
T  38807670 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggaacaaattacgccatagtgttctatcataaaccatatttggatccaact 38807766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 284
Target Start/End: Complemental strand, 38869141 - 38869049
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    ||||||||| ||||||||||||| ||||||| ||| |||||| |||| ||||| | ||||| || || ||||  ||||| | |||||||||||    
T  38869141 cactaagtggggtcggctacatggatcaaacgacgccataatgttctatcatataccatatatctatccaacccattaatcgctagatctttc 38869049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 284
Target Start/End: Complemental strand, 40416630 - 40416538
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    ||||||||| ||||||||| | | |||| | |||  |||||| |||| ||||||| ||||||||||| ||||| ||||| || ||||||||||    
T  40416630 cactaagtggggtcggctaaagggatcacattacaccataatgttctatcataaaccatatttcgatccaactcattaatctatagatctttc 40416538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 27072510 - 27072573
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttc 255  Q
    |||||||  |||||||||||||| |||||| |||| |||||| |||| ||||||| ||||||||    
T  27072510 cactaagcatggtcggctacatggatcaaattacgccataatgttctatcataaaccatatttc 27072573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 284
Target Start/End: Original strand, 52561593 - 52561704
Alignment:
Q  174 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 272  Q
    ||||||||||| |||| | ||||||||| ||||||||||||| |||||| | || |||||| ||||  |  ||| ||||||| ||| ||||| ||||| |    
T  52561593 caacaaccaagccttatcccactaagtggggtcggctacatggatcaaatttcgccataatgttctacccgaaaccatatttggatccaactcattaacc 52561692  T
Q  273 tctagatctttc 284  Q
    |||| |||||||    
T  52561693 tctaaatctttc 52561704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 283
Target Start/End: Complemental strand, 8392030 - 8391940
Alignment:
Q  193 actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatcttt 283  Q
    |||||||| ||| ||||||||| ||||||  ||| |||| |||||| ||| ||||||||||| ||| ||||| ||| | ||||| ||||||    
T  8392030 actaagtggggttggctacatggatcaaatgacgccatagtattctatcaaaaatcatatttggatccaacttattgacctctaaatcttt 8391940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 44941775 - 44941853
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaa 246  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||| | |||| |||||||    
T  44941775 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccatagtgttctatcataaa 44941853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 4029405 - 4029352
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaa 221  Q
    |||| |||||||||||||||| | ||||||||| ||||||||||||| ||||||    
T  4029405 aacaacaacaaccaagtcttatcccactaagtggggtcggctacatggatcaaa 4029352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 37430419 - 37430484
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataat 233  Q
    |||| ||||||||||| |||| ||||||||||| | ||||||| ||| ||||||||||| ||||||    
T  37430419 aacaacaacaaccaagccttatctcactaagtgggatcggctatatggatcaaactacgccataat 37430484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 254
Target Start/End: Complemental strand, 50257848 - 50257767
Alignment:
Q  174 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 254  Q
    ||||||| ||| |||| ||||||||||| ||| ||||||||| |||||| |||  |||||| |||| ||||||| |||||||    
T  50257848 caacaacgaagccttatctcactaagtggggttggctacatggatcaaattacaccataatgttctatcataaaccatattt 50257767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 51812737 - 51812676
Alignment:
Q  223 tacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    |||| ||||||||||| ||||||| |||||||||||  |||| |||||  ||||||||||||    
T  51812737 tacggcataatattctatcataaaccatatttcgatctaactcattaacatctagatctttc 51812676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 2544852 - 2544788
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcg 256  Q
    ||||||||| ||||||||||||| |||||| || | |||||| |||| | ||||| |||||||||    
T  2544852 cactaagtggggtcggctacatggatcaaattatgccataatgttctattataaaccatatttcg 2544788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 29129058 - 29128950
Alignment:
Q  178 aaccaagtctta-ctcactaagtgtggtcggctacat-gtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactct 275  Q
    ||||||| |||| ||||||||||| |||||||||||| | |||| | |||  |||||| |||| ||||||| ||||||| ||| |||||  |||| ||||    
T  29129058 aaccaagccttatctcactaagtggggtcggctacatgggatcatattacaccataatgttctatcataaaccatatttggatccaacttgttaacctct 29128959  T
Q  276 agatctttc 284  Q
    | |||||||    
T  29128958 aaatctttc 29128950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 276
Target Start/End: Complemental strand, 34444639 - 34444531
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 267  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||  |||||| |||  |||||| || | | ||||| ||||||| ||| ||||| ||    
T  34444639 aacaacaacaaccaagccttatcccactaagtggggtcggctacatagatcaaattacaccataatgttttattataaaccatatttggatccaactcat 34444540  T
Q  268 taaactcta 276  Q
    ||| |||||    
T  34444539 taatctcta 34444531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 282
Target Start/End: Original strand, 40920562 - 40920642
Alignment:
Q  202 ggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctt 282  Q
    ||||| ||||||| ||||||  ||  ||||||||||| ||||| | |||||||| || ||||| ||||| |||||||||||    
T  40920562 ggtcgactacatgaatcaaaagacaccataatattctatcatataccatatttctatccaactcattaatctctagatctt 40920642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 169 - 284
Target Start/End: Original strand, 34504 - 34620
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 267  Q
    |||| |||||||||||||||| | ||||||||| |||| |||||||| |||||| |||| |||||| |||| ||||||| |||||||| || ||||| ||    
T  34504 aacaacaacaaccaagtcttatcccactaagtggggtcagctacatggatcaaattacgccataatgttctatcataaaccatatttcaatccaactcat 34603  T
Q  268 taaactctagatctttc 284  Q
    ||| || ||||||||||    
T  34604 taatctttagatctttc 34620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 283
Target Start/End: Complemental strand, 608439 - 608329
Alignment:
Q  174 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 272  Q
    |||||||||||||||| | ||||||||  ||||||||||||| ||||||  |||||||| |||||| ||| ||| ||||||| ||| ||||| ||| |||    
T  608439 caacaaccaagtcttatcccactaagtagggtcggctacatggatcaaatgacgtcatagtattctatcaaaaaccatatttggatccaactcattgaac 608340  T
Q  273 tctagatcttt 283  Q
    |||| ||||||    
T  608339 tctaaatcttt 608329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 254
Target Start/End: Complemental strand, 12890858 - 12890772
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 254  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||| | |||| ||||||| |||||||    
T  12890858 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccatagtgttctatcataaaccatattt 12890772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 254
Target Start/End: Complemental strand, 30031534 - 30031453
Alignment:
Q  174 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 254  Q
    ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||| | |||| ||||||| |||||||    
T  30031534 caacaaccaagccttatcccactaagtgaggtcggctacatggatcaaattacgccatagtgttctatcataaaccatattt 30031453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 31818788 - 31818712
Alignment:
Q  194 ctaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaa 270  Q
    ||||||| ||||||||||||| |||||| |||| |||||| |||| ||||||| |||| || ||| ||||| |||||    
T  31818788 ctaagtggggtcggctacatggatcaaattacgacataatgttctatcataaaccatactttgatccaactcattaa 31818712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 270
Target Start/End: Original strand, 12133900 - 12134003
Alignment:
Q  168 aaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaa 266  Q
    ||||| ||||||||||| |||  ||||||||||| ||||||||||||| |||| | || | |||||| |||| | || ||||| |||||||| ||||| |    
T  12133900 aaacaacaacaaccaagccttttctcactaagtggggtcggctacatggatcagattatgccataatgttctattatgaatcacatttcgatccaactca 12133999  T
Q  267 ttaa 270  Q
    ||||    
T  12134000 ttaa 12134003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 258
Target Start/End: Original strand, 7513013 - 7513079
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgat 258  Q
    ||||||||| ||||  ||||||  |||||| ||||||||||| |||| ||||||| |||||||||||    
T  7513013 cactaagtggggtcaactacatagatcaaattacgtcataatgttctatcataaaccatatttcgat 7513079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 9109530 - 9109584
Alignment:
Q  190 ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcata 244  Q
    |||||||| || ||||||||||||| |||||||||| ||||| |||||| |||||    
T  9109530 ctcactaactggggtcggctacatggatcaaactacttcatagtattctatcata 9109584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 7337220 - 7337272
Alignment:
Q  194 ctaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaa 246  Q
    ||||||| ||||||||||||| | |||| |||| ||||||||||| |||||||    
T  7337220 ctaagtggggtcggctacatggaccaaattacgccataatattctatcataaa 7337272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 284
Target Start/End: Complemental strand, 8364815 - 8364723
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    ||||||| | ||||||||||||| |||||| |||| |||||| |||| ||||||| ||| ||||  | ||||| |||||  |||| |||||||    
T  8364815 cactaagcggggtcggctacatggatcaaattacgccataatgttctatcataaaccatgtttcagtccaacttattaatttctaaatctttc 8364723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 55008029 - 55007913
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 267  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||||||||||  ||| ||||||| ||||||||| | ||||| ||    
T  55008029 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgtcataatgatctatcataaaccatatttcggtccaactcat 55007930  T
Q  268 taaactctagatctttc 284  Q
    ||| ||||| |||||||    
T  55007929 taatctctaaatctttc 55007913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 45209204 - 45209283
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaat 247  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||||||| ||||||||||| ||||||||    
T  45209204 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaactacgccataatattctatcataaat 45209283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 25575107 - 25574991
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 267  Q
    |||| ||||||||||| |||| | |||||| || |||| |||||||| |||||| |||  || ||| |||| ||||||| ||||||||||| ||||| ||    
T  25575107 aacaacaacaaccaagccttatcccactaaatggggtctgctacatggatcaaattacaccacaatgttctatcataaaccatatttcgatccaactcat 25575008  T
Q  268 taaactctagatctttc 284  Q
    ||| |||||||||||||    
T  25575007 taatctctagatctttc 25574991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 284
Target Start/End: Original strand, 26024854 - 26024965
Alignment:
Q  174 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 272  Q
    ||||||||||| |||| | ||||||||| ||||||||||||| || ||| |||  |||||| |||| ||||||| ||| | ||||| ||||| ||||| |    
T  26024854 caacaaccaagccttatcccactaagtgaggtcggctacatggataaaattacaccataatgttctatcataaaccatgtctcgatccaactcattaatc 26024953  T
Q  273 tctagatctttc 284  Q
    ||||||||||||    
T  26024954 tctagatctttc 26024965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 252
Target Start/End: Complemental strand, 49686975 - 49686892
Alignment:
Q  170 acagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatat 252  Q
    |||||||||||||||||||| | ||||||||| |||||||||||||  |||||| ||| ||||||||||  ||||| |||||||    
T  49686975 acagcaacaaccaagtcttatcccactaagtggggtcggctacatggttcaaacgacgccataatattccatcatatatcatat 49686892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 174 - 283
Target Start/End: Complemental strand, 1793740 - 1793630
Alignment:
Q  174 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 272  Q
    ||||||| ||| |||| ||||||||||| | ||||||||||| |||||| ||||||||| |  ||| ||||||||||||||| ||| ||||| ||| | |    
T  1793740 caacaactaagccttatctcactaagtgagatcggctacatgaatcaaattacgtcatagtgctctatcataaatcatatttggatccaactcattgacc 1793641  T
Q  273 tctagatcttt 283  Q
    |||| ||||||    
T  1793640 tctaaatcttt 1793630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 169 - 264
Target Start/End: Complemental strand, 28236465 - 28236369
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 264  Q
    |||| |||||||||||||||| | ||||||||| ||||||||||||  |||||| |||  ||||||||||| ||||||| || |||| ||| |||||    
T  28236465 aacaacaacaaccaagtcttatcccactaagtggggtcggctacatagatcaaattacaccataatattctatcataaaccaaatttggatccaact 28236369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 279
Target Start/End: Complemental strand, 31339783 - 31339696
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagat 279  Q
    ||||||||| |||||| |||||| | ||||| |||||||||| |||| ||||  | ||||||||||| ||||| ||||| ||||||||    
T  31339783 cactaagtggggtcggatacatggaccaaacgacgtcataatgttctatcatgtaccatatttcgatccaactcattaatctctagat 31339696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 35690563 - 35690476
Alignment:
Q  160 aacaactaaaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaa 246  Q
    |||||| | |||| ||| |||||||||||| | ||||||||| ||||||||||||| |||||| |||| |||||| |||| |||||||    
T  35690563 aacaacaacaacaacaaaaaccaagtcttatcccactaagtggggtcggctacatggatcaaattacgccataatgttctatcataaa 35690476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 284
Target Start/End: Original strand, 26037528 - 26037620
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    ||||||||| ||||||||||||| ||| || |||| |||| | |||| ||||||| ||||||| ||| ||||| ||| | ||||| |||||||    
T  26037528 cactaagtggggtcggctacatggatccaattacgccatagtgttctatcataaaccatatttggatccaactcattcacctctaaatctttc 26037620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 30480372 - 30480320
Alignment:
Q  202 ggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 254  Q
    ||||||||||||| |||||| |||||||||| ||||| ||||||| |||||||    
T  30480372 ggtcggctacatggatcaaattacgtcataaaattctatcataaaccatattt 30480320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 284
Target Start/End: Original strand, 40018212 - 40018304
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    ||||||||| ||||||||||||| ||||||| ||| | |||| |||| ||||| |||||||  | || ||||| ||| | |||||||||||||    
T  40018212 cactaagtggggtcggctacatggatcaaacgacgccgtaatgttctatcatatatcatatccctatccaactcattgatctctagatctttc 40018304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 284
Target Start/End: Original strand, 45204839 - 45204954
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 267  Q
    |||| ||||||||||| |||| | ||||||||  ||| ||||||||  |||||| |||| | |||| |||| ||||||| ||||||| ||| ||||| ||    
T  45204839 aacaacaacaaccaagccttatcccactaagttgggtgggctacatagatcaaattacgcc-taatgttctatcataaaccatatttggatccaacttat 45204937  T
Q  268 taaactctagatctttc 284  Q
    ||||||||| |||||||    
T  45204938 taaactctaaatctttc 45204954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 284
Target Start/End: Complemental strand, 51421989 - 51421897
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    ||||||||| | | ||||||||| |||||| ||||||||||| |||| ||||||| ||| ||| ||| ||| | ||||| ||||| |||||||    
T  51421989 cactaagtgagattggctacatggatcaaattacgtcataatgttctatcataaaccatttttggatccaattcattaacctctaaatctttc 51421897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 244
Target Start/End: Complemental strand, 56375573 - 56375497
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcata 244  Q
    |||| |||||||||||||||| | ||||||||| ||||||||||||| ||||||  |||||||| | |||| |||||    
T  56375573 aacaacaacaaccaagtcttatcccactaagtgaggtcggctacatggatcaaatgacgtcatagtgttctatcata 56375497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 31961265 - 31961328
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcata 231  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||| ||||||||    
T  31961265 aacaacaacaaccaagccttatcccactaagtgaggtcggctacatgaatcaaacgacgtcata 31961328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 275
Target Start/End: Complemental strand, 34379657 - 34379579
Alignment:
Q  196 aagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactct 275  Q
    ||||| ||||||||||||| |||||  |||| ||||||||||| ||||||| ||||||||| | ||||| ||||| ||||    
T  34379657 aagtggggtcggctacatg-atcaagttacgccataatattctatcataaaccatatttcggtccaactcattaatctct 34379579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 284
Target Start/End: Original strand, 55388215 - 55388326
Alignment:
Q  174 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 272  Q
    ||||||||||| |||| | ||||||||| ||||| | ||||| |||||| |||  || ||| |||| |||||||||||||||||||  |||| ||||| |    
T  55388215 caacaaccaagccttatcccactaagtggggtcgacaacatggatcaaattacaccacaatgttctatcataaatcatatttcgatctaactcattaatc 55388314  T
Q  273 tctagatctttc 284  Q
    || | |||||||    
T  55388315 tccaaatctttc 55388326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 264
Target Start/End: Complemental strand, 7947214 - 7947124
Alignment:
Q  175 aacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 264  Q
    |||||||||| |||| | ||||||||| ||||||||||||| |||||| ||| | ||| | |||| |||||||||| |||| ||| |||||    
T  7947214 aacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacatgatagtgttctatcataaatcaaatttggatccaact 7947124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 254
Target Start/End: Original strand, 20601675 - 20601737
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 254  Q
    ||||||||| | || | |||||| |||||| ||||||||||| |||| |||||||||||||||    
T  20601675 cactaagtgggttcagttacatgaatcaaattacgtcataatgttctatcataaatcatattt 20601737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 276
Target Start/End: Original strand, 40420255 - 40420321
Alignment:
Q  210 acatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactcta 276  Q
    |||||||||||| |||||| |||| |||| ||||||| ||||||  ||||||||| ||||| |||||    
T  40420255 acatgtatcaaattacgtcgtaatgttctatcataaaccatattaggattcaactcattaatctcta 40420321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 270
Target Start/End: Original strand, 56439594 - 56439672
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaa 270  Q
    ||||||||| ||| ||||| ||| || ||| ||||  ||||| |||| ||||||| ||||||||||| |||||||||||    
T  56439594 cactaagtggggttggctatatggattaaattacgctataatgttctatcataaaccatatttcgatccaactaattaa 56439672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 264
Target Start/End: Complemental strand, 6957881 - 6957785
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 264  Q
    |||| ||||||||||| |||| | ||||||||| | ||||||||||| ||||||  |||||||| | |||| ||||| |||| |||| ||| |||||    
T  6957881 aacaacaacaaccaagccttatcccactaagtgggatcggctacatggatcaaatgacgtcatagtgttctatcatacatcaaatttggatccaact 6957785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 270
Target Start/End: Original strand, 29209180 - 29209276
Alignment:
Q  175 aacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaa 270  Q
    ||||||||||||||| | || |||||| ||||||||||||  ||||||| ||| ||||||  ||| ||||| | |||||||| || ||||| |||||    
T  29209180 aacaaccaagtcttatcccattaagtggggtcggctacattgatcaaacaacgccataatgctctatcatataccatatttctatccaactcattaa 29209276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 285
Target Start/End: Original strand, 31403058 - 31403150
Alignment:
Q  193 actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttca 285  Q
    |||||||| ||||| ||||||| ||||| | ||  ||||||  ||| ||||| | || ||||| || ||||||||||| ||||||||||||||    
T  31403058 actaagtggggtcgtctacatggatcaagcaacaccataatgctctatcatataccacatttctatccaactaattaatctctagatctttca 31403150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 37488374 - 37488258
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 267  Q
    |||| ||||||||||| |||| | ||||||||| ||  ||||||||| |||||| |||| ||||||  ||| |||| || ||||||| |||  |||| ||    
T  37488374 aacaacaacaaccaagccttatcccactaagtggggctggctacatggatcaaattacgccataatgctctatcattaaccatattttgatcaaacttat 37488275  T
Q  268 taaactctagatctttc 284  Q
    |||  ||||||||||||    
T  37488274 taatttctagatctttc 37488258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 279
Target Start/End: Original strand, 48154881 - 48154957
Alignment:
Q  203 gtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagat 279  Q
    |||||||||||  ||||||| | | |||||| |||||||||| ||||| |||| || ||||| ||||| ||||||||    
T  48154881 gtcggctacatacatcaaacaatgccataatgttctgtcatatatcatgtttctatccaactcattaatctctagat 48154957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 50967051 - 50967103
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcata 244  Q
    ||||||||| ||||||||||||| |||||| |||| |||||| |||| |||||    
T  50967051 cactaagtgaggtcggctacatggatcaaattacgacataattttctttcata 50967103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 192 - 284
Target Start/End: Original strand, 16035750 - 16035842
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    ||||||||| |||| |||||||| |||||| ||||||||||| ||||  |||||| ||||||||||| ||||||| ||| |||||||| ||||    
T  16035750 cactaagtggggtcagctacatgaatcaaattacgtcataatgttctaccataaaccatatttcgatccaactaagtaatctctagatatttc 16035842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 174 - 254
Target Start/End: Original strand, 35914605 - 35914686
Alignment:
Q  174 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 254  Q
    |||||||||||||||| ||||||||||| |||| |||||||| |||||| |||| |||||| |||| ||||||| |||||||    
T  35914605 caacaaccaagtcttatctcactaagtggggtcagctacatggatcaaattacgccataatgttctatcataaaccatattt 35914686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 192 - 284
Target Start/End: Complemental strand, 490594 - 490502
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    ||||||||| ||||||||||||| |||||| |||| |||||| |||| ||||||| ||||||| ||| ||||| || || ||||| |||||||    
T  490594 cactaagtggggtcggctacatggatcaaattacgccataatgttctatcataaaccatatttggatccaactcatcaatctctaaatctttc 490502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 169 - 284
Target Start/End: Original strand, 30198265 - 30198381
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 267  Q
    |||| ||||||||||| |||| | ||||||||| ||||||| ||||  ||||||||||  ||||||||||| ||||||| |||||| |||| ||||| ||    
T  30198265 aacaacaacaaccaagccttatcccactaagtggggtcggcaacatagatcaaactacaccataatattctatcataaaccatattccgatccaactcat 30198364  T
Q  268 taaactctagatctttc 284  Q
    ||| ||| | |||||||    
T  30198365 taatctcaatatctttc 30198381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 42584641 - 42584526
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 267  Q
    |||| |||||| ||||||||| | ||||||||| ||||||||||| | |||||| ||||||||||| |||| ||||||| ||||||| ||| ||| | ||    
T  42584641 aacaacaacaatcaagtcttatcccactaagtggggtcggctacaag-atcaaattacgtcataatgttctatcataaaccatatttggatccaaatcat 42584543  T
Q  268 taaactctagatctttc 284  Q
    ||| || ||||||||||    
T  42584542 taacctatagatctttc 42584526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 202 - 284
Target Start/End: Original strand, 30783075 - 30783157
Alignment:
Q  202 ggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    ||||||||||||| |||||||||| ||||||| || | | ||||| | ||||||||| ||||| ||||| |||||||||||||    
T  30783075 ggtcggctacatggatcaaactacctcataatgttttattataaaccgtatttcgatccaactcattaatctctagatctttc 30783157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 23023481 - 23023392
Alignment:
Q  195 taagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    |||||| |||||| |||||| ||||||| ||||||||||||||| ||||| ||||| || | || ||||| ||||| || ||||||||||    
T  23023481 taagtggggtcggttacatggatcaaacgacgtcataatattctatcatatatcatgttcctatccaactcattaatctgtagatctttc 23023392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 192 - 284
Target Start/End: Complemental strand, 21425305 - 21425213
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    ||||||||  |||| |||||||| |||||| || | ||||||  ||| ||||||||||||||||||| ||||| ||||| ||||| |||||||    
T  21425305 cactaagtagggtctgctacatggatcaaattatgccataatggtctatcataaatcatatttcgatccaactcattaatctctatatctttc 21425213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 281
Target Start/End: Original strand, 43904698 - 43904777
Alignment:
Q  202 ggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatct 281  Q
    ||||||||||||| |||||| |||| |||||| |||| ||||||| ||||||| ||| ||||| ||||| ||||| ||||    
T  43904698 ggtcggctacatggatcaaattacgccataatgttctatcataaaccatatttagatccaactcattaatctctaaatct 43904777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 280
Target Start/End: Original strand, 24399812 - 24399900
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatc 280  Q
    ||||||||||||| ||||||||  | ||||  || |||||||||||| ||||||| |||||||| || ||||| ||||| ||| |||||    
T  24399812 cactaagtgtggttggctacatagaacaaatgacatcataatattctatcataaaccatatttcaatccaactcattaatctcgagatc 24399900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 35324056 - 35323988
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatatt 236  Q
    |||| ||||||||||| |||| | ||||||||| |||||||||| || |||||| ||||||||||||||    
T  35324056 aacaacaacaaccaagccttatcccactaagtggggtcggctacgtggatcaaattacgtcataatatt 35323988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 18741908 - 18741845
Alignment:
Q  176 acaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattct 238  Q
    |||||||||||||| | ||||||||| |||||||||| || |||||| ||||||||||| ||||    
T  18741908 acaaccaagtcttatcccactaagtggggtcggctacttggatcaaattacgtcataatgttct 18741845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 18746872 - 18746809
Alignment:
Q  176 acaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattct 238  Q
    |||||||||||||| | ||||||||| |||||||||| || |||||| ||||||||||| ||||    
T  18746872 acaaccaagtcttatcccactaagtggggtcggctacttggatcaaattacgtcataatgttct 18746809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 284
Target Start/End: Complemental strand, 30559935 - 30559860
Alignment:
Q  209 tacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    |||||| |||||| ||||||||||| |||| ||||||| ||||| | ||| ||||| ||||| ||||| |||||||    
T  30559935 tacatggatcaaattacgtcataatgttctatcataaaccatatatggatccaactcattaatctctaaatctttc 30559860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 1928586 - 1928656
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattct 238  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||||| ||||    
T  1928586 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccataatgttct 1928656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 14742861 - 14742903
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataata 234  Q
    ||||||||| ||| ||||||||| |||||||||||||||||||    
T  14742861 cactaagtggggttggctacatggatcaaactacgtcataata 14742903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 264
Target Start/End: Complemental strand, 29736068 - 29735994
Alignment:
Q  190 ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 264  Q
    |||||||||| ||  || ||||||| |||||| ||||||||||  |||  ||||||||||||||| |||||||||    
T  29736068 ctcactaagtatgaccgactacatgaatcaaattacgtcataaagttcaatcataaatcatatttggattcaact 29735994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 30689994 - 30689940
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaa 246  Q
    ||||||||| ||||||||||||| |||||| ||||||||||| || | |||||||    
T  30689994 cactaagtggggtcggctacatggatcaaattacgtcataatgttatatcataaa 30689940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 39953263 - 39953317
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaac 222  Q
    |||| |||||||||||||||| | ||||||||| ||||||||||||| |||||||    
T  39953263 aacaacaacaaccaagtcttatcccactaagtggggtcggctacatgaatcaaac 39953317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 282
Target Start/End: Original strand, 2518422 - 2518511
Alignment:
Q  193 actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctt 282  Q
    |||||||| |||| |||||| | |||||| || | |||||| |||| ||| |||||||||||||||  |||| ||||| || ||||||||    
T  2518422 actaagtggggtcagctacaaggatcaaattatgccataatgttctatcagaaatcatatttcgatcaaactgattaatctgtagatctt 2518511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 18473976 - 18474041
Alignment:
Q  174 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattct 238  Q
    |||||||||||||||| | |||||||||  |||||||||||| ||||||| | |||||||| ||||    
T  18473976 caacaaccaagtcttatcccactaagtggtgtcggctacatgaatcaaacgaagtcataatgttct 18474041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 276
Target Start/End: Complemental strand, 31716064 - 31715995
Alignment:
Q  207 gctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactcta 276  Q
    |||||||| |||||| |||| |||||| |||| || |||| ||||||| ||| ||||||||||| |||||    
T  31716064 gctacatggatcaaattacgccataatgttctatcttaaaccatatttggatccaactaattaatctcta 31715995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 35643672 - 35643721
Alignment:
Q  235 ttctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    |||| ||||||| ||||||||||| ||||| ||||| |||||||||||||    
T  35643672 ttctatcataaaccatatttcgatccaactcattaatctctagatctttc 35643721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 38391919 - 38392008
Alignment:
Q  195 taagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    |||||| | ||||| ||||| || ||| |||| ||||||||||| ||||| | ||||||||||| | ||| ||||| || ||||||||||    
T  38391919 taagtgggatcggccacatggatgaaattacgccataatattctatcatataccatatttcgatcccactcattaatctgtagatctttc 38392008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 39967525 - 39967614
Alignment:
Q  195 taagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    |||||| | ||||||||||| ||||||||||| |||||| ||||  ||||||  |||| || || ||||| ||||| | |||||||||||    
T  39967525 taagtgggatcggctacatggatcaaactacgccataatgttctaacataaactatatctcaatccaactcattaatcgctagatctttc 39967614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 45419513 - 45419440
Alignment:
Q  174 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaa 246  Q
    ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||  |||||| |||| |||||||    
T  45419513 caacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacaccataatgttctatcataaa 45419440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 23492317 - 23492201
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 267  Q
    |||| |||||| |||| |||| ||||||||||| ||||||||||||| || |||  ||  |||| | |||| ||||| |||||||||| || ||||| ||    
T  23492317 aacaacaacaaacaagccttatctcactaagtggggtcggctacatggattaaatgacaccatagtgttctatcatatatcatatttctatccaactcat 23492218  T
Q  268 taaactctagatctttc 284  Q
    ||| | ||| |||||||    
T  23492217 taatcgctacatctttc 23492201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 32931219 - 32931155
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcg 256  Q
    ||||||||| ||||||||||||| |||||| || | |||||| |||| ||||| | |||||||||    
T  32931219 cactaagtggggtcggctacatggatcaaattatgccataatgttctatcatacaccatatttcg 32931155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 244
Target Start/End: Complemental strand, 36545432 - 36545356
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcata 244  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||  |||||||| | |||| |||||    
T  36545432 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgtcatagtgttctatcata 36545356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 43013239 - 43013287
Alignment:
Q  216 atcaaactacgtcataatattctgtcataaatcatatttcgattcaact 264  Q
    |||||| ||||||||||||  || ||||||||||||||||||| |||||    
T  43013239 atcaaattacgtcataataacctatcataaatcatatttcgatccaact 43013287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 7678760 - 7678645
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 267  Q
    |||| |||||||||||| ||| | ||||||||| ||||||||||||| |||||||||| ||||||| || | | ||||| | ||||||||| ||||| ||    
T  7678760 aacaacaacaaccaagttttatcccactaagtggggtcggctacatggatcaaactacctcataatgtt-tattataaaccgtatttcgatccaactcat 7678662  T
Q  268 taaactctagatctttc 284  Q
    ||| |||||||||||||    
T  7678661 taatctctagatctttc 7678645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 176 - 284
Target Start/End: Complemental strand, 14668047 - 14667938
Alignment:
Q  176 acaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactc 274  Q
    |||||||||||||| | ||||||||| |||||| |||||| |||||| |||  |||||| |||| ||||||| |||| || ||| ||||| ||||| |||    
T  14668047 acaaccaagtcttatcccactaagtggggtcggttacatggatcaaattacaccataatgttctatcataaaccatacttggatccaactcattaatctc 14667948  T
Q  275 tagatctttc 284  Q
    ||||||||||    
T  14667947 tagatctttc 14667938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 169 - 284
Target Start/End: Original strand, 7359260 - 7359375
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 267  Q
    |||| |||||||||||||||  | ||||||||| |||| |||||||| |||||| ||||||||||| || | || |||| ||||||||||| ||||| ||    
T  7359260 aacaacaacaaccaagtcttgtcccactaagtggggtcagctacatggatcaaattacgtcataatgtt-tatcgtaaaccatatttcgatccaacttat 7359358  T
Q  268 taaactctagatctttc 284  Q
    ||| |||||||| ||||    
T  7359359 taatctctagatttttc 7359375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 284
Target Start/End: Original strand, 683726 - 683816
Alignment:
Q  194 ctaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    ||||||| ||| ||||||||| ||||||||||  |||||| |||| ||||||| ||||||| ||| ||||||||||| || || |||||||    
T  683726 ctaagtggggttggctacatggatcaaactacaacataatgttctatcataaaccatattttgatacaactaattaagctttaaatctttc 683816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 255
Target Start/End: Complemental strand, 6788349 - 6788263
Alignment:
Q  169 aacagcaacaaccaagtcttactcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttc 255  Q
    |||| |||| |||||||||| |  |||||||| ||||||||||||| |||||| ||||  ||||| |||| ||||||||||||||||    
T  6788349 aacaacaaccaccaagtctttcctactaagtgaggtcggctacatgaatcaaattacgctataatgttctatcataaatcatatttc 6788263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 28165 - 28049
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 267  Q
    |||| ||| |||||||||||| || ||||| || |||| ||||||||||||||| || | |||| | |||| ||| ||||||||||| ||| ||||| ||    
T  28165 aacaacaaaaaccaagtcttatctaactaaatggggtcagctacatgtatcaaattatgccatagtgttctatcagaaatcatatttggatccaacttat 28066  T
Q  268 taaactctagatctttc 284  Q
    ||| ||||| |||||||    
T  28065 taacctctaaatctttc 28049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 284
Target Start/End: Original strand, 418061 - 418149
Alignment:
Q  196 aagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    ||||| ||||||||||||| |||||| |||| |||||| |||| ||||||| || |||| ||| ||||| ||||| ||||| |||||||    
T  418061 aagtggggtcggctacatggatcaaattacgccataatgttctatcataaaccacatttggatccaactcattaatctctaaatctttc 418149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 192 - 284
Target Start/End: Complemental strand, 9235305 - 9235214
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    ||||||||| ||||||||||||| |||||| || | |||||| |||| ||||||| ||||||||||| || || ||||| ||||| |||||||    
T  9235305 cactaagtg-ggtcggctacatggatcaaattatgccataatgttctatcataaaccatatttcgatccagctcattaatctctatatctttc 9235214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 195 - 283
Target Start/End: Complemental strand, 14911428 - 14911340
Alignment:
Q  195 taagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatcttt 283  Q
    |||||| ||||||||||||| ||||||  ||| |||| |||||| ||| ||||||||||| ||| ||||| ||||| ||||| ||||||    
T  14911428 taagtggggtcggctacatggatcaaatgacgccatagtattctatcaaaaatcatatttggatccaactcattaacctctaaatcttt 14911340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 15252767 - 15252839
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 264  Q
    ||||||||| ||||||||||||| || ||||||| ||||||| |||| ||||||| | ||||||||| |||||    
T  15252767 cactaagtggggtcggctacatgaattaaactacatcataatgttctatcataaaccctatttcgatccaact 15252839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 280
Target Start/End: Complemental strand, 20367148 - 20367064
Alignment:
Q  196 aagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatc 280  Q
    ||||| ||| ||||| ||| |||||| ||||||||||| || ||||||||| ||||||| ||| ||||| ||||| |||||||||    
T  20367148 aagtggggttggctatatggatcaaattacgtcataatgttatgtcataaaccatatttggatccaactcattaatctctagatc 20367064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 192 - 284
Target Start/End: Complemental strand, 27998700 - 27998608
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    ||||||||| |||||| |||||| ||||||| ||||||||||||||| ||||| ||||| || | ||  |||| ||||| || ||||||||||    
T  27998700 cactaagtggggtcggttacatggatcaaacgacgtcataatattctatcatatatcatgttcctatctaactcattaatctgtagatctttc 27998608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 192 - 284
Target Start/End: Complemental strand, 30588706 - 30588614
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    |||||||||  |||||||||||| |||| |  |||||||||| |||| | ||||| ||||||||||| ||||| ||| | |||||||||||||    
T  30588706 cactaagtggagtcggctacatggatcatatcacgtcataatgttctattataaaccatatttcgatccaactcattcatctctagatctttc 30588614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 254
Target Start/End: Complemental strand, 11675813 - 11675727
Alignment:
Q  169 aacagcaacaaccaagtcttactca-ctaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 254  Q
    |||| ||||||||||| ||||  || ||||||| ||||||||||||| || |||||||| |||||| |||| ||||||| |||||||    
T  11675813 aacaacaacaaccaagccttatccaactaagtggggtcggctacatggattaaactacgccataatgttctatcataaaccatattt 11675727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 254
Target Start/End: Complemental strand, 18855890 - 18855804
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 254  Q
    |||| |||||||||||||||| | ||||||||| ||||||||||||| |||||| || |  ||||| |||| ||||||| |||||||    
T  18855890 aacaacaacaaccaagtcttatcccactaagtggggtcggctacatggatcaaattatgctataatgttctatcataaaccatattt 18855804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 276
Target Start/End: Complemental strand, 1275523 - 1275439
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactcta 276  Q
    ||||||||| ||||||||||||| ||||||  |||||||||| |||| ||| | | || |||| ||||||||| ||||| |||||    
T  1275523 cactaagtggggtcggctacatggatcaaatgacgtcataatgttctatcaaacaccaaatttggattcaactgattaacctcta 1275439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 284
Target Start/End: Original strand, 12576883 - 12576975
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    |||||| || |||||||||||||||| |||  ||  ||||||  ||| ||||| | |||||||| |||||||| ||||| |||||||||||||    
T  12576883 cactaattggggtcggctacatgtataaaatgacaccataatggtctatcatataccatatttctattcaactcattaatctctagatctttc 12576975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 264
Target Start/End: Complemental strand, 20457032 - 20456960
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 264  Q
    ||||||||| ||||||||||||| ||||||  ||| |||||| |||| ||||| |||| |||| |||||||||    
T  20457032 cactaagtggggtcggctacatggatcaaatgacgccataatgttctatcatacatcaaatttagattcaact 20456960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 36551432 - 36551376
Alignment:
Q  166 taaaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaa 221  Q
    ||||||| ||||||||||| |||| ||||||||||| ||||||||||||| ||||||    
T  36551432 taaaacaacaacaaccaagccttatctcactaagtggggtcggctacatggatcaaa 36551376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 43557856 - 43557928
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 264  Q
    ||||||||| ||||||||||||  |||||  || |||||||| |||| ||||||| ||||||||||| |||||    
T  43557856 cactaagtggggtcggctacatagatcaacttaagtcataatgttctatcataaaccatatttcgatccaact 43557928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 254
Target Start/End: Original strand, 26884712 - 26884774
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 254  Q
    ||||||||| ||||||||||||| |||||| | |||| || | |||| |||||||||||||||    
T  26884712 cactaagtggggtcggctacatggatcaaattgcgtcgtagtgttctatcataaatcatattt 26884774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 4653535 - 4653482
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaa 221  Q
    |||| |||||||||||||||| ||||||||||| |||||| |||||| ||||||    
T  4653535 aacaacaacaaccaagtcttatctcactaagtggggtcggatacatgaatcaaa 4653482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 38657101 - 38657040
Alignment:
Q  193 actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 254  Q
    ||||||||  || ||||||||| ||||||| || ||||||| |||| |||||||||||||||    
T  38657101 actaagtgaagttggctacatgaatcaaacgacatcataatgttctatcataaatcatattt 38657040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 284
Target Start/End: Complemental strand, 38684764 - 38684647
Alignment:
Q  168 aaacagcaacaaccaagtcttactc-actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaa 266  Q
    ||||| |||||||||||  ||| || |||||||| ||||  ||||||| ||||||  ||| |||||| |||| |||   | |||||||| || |||||||    
T  38684764 aaacaacaacaaccaagctttattccactaagtggggtcaactacatgaatcaaataacgccataatgttctatcaagtaccatatttctatccaactaa 38684665  T
Q  267 ttaaactctagatctttc 284  Q
    |||| |||||||||||||    
T  38684664 ttaatctctagatctttc 38684647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 264
Target Start/End: Complemental strand, 38685226 - 38685154
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 264  Q
    ||||||||| ||||||||||||| ||||||  ||| |||| | |||| ||||||| ||||||| ||| |||||    
T  38685226 cactaagtggggtcggctacatggatcaaatgacgccatattgttctatcataaaccatatttggatccaact 38685154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 43475522 - 43475406
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 267  Q
    |||| ||||||||||| |||| | || ||||||  || |||||| || |||||| |||  |||||  ||||  |||||||||||||||||| ||||| ||    
T  43475522 aacaacaacaaccaagccttatcccattaagtggagttggctacgtggatcaaattacaccataacgttctaccataaatcatatttcgatccaactcat 43475423  T
Q  268 taaactctagatctttc 284  Q
    ||| |||| ||||||||    
T  43475422 taatctctggatctttc 43475406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 284
Target Start/End: Complemental strand, 36304220 - 36304133
Alignment:
Q  197 agtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaactctagatctttc 284  Q
    |||| ||||||||||||| |||||| |||| |||||| | || ||||||| ||||||| ||| ||||| ||||| |||||||||||||    
T  36304220 agtggggtcggctacatggatcaaattacgccataatgtcctatcataaaccatattttgatccaactcattaatctctagatctttc 36304133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 278
Target Start/End: Complemental strand, 32170683 - 32170578
Alignment:
Q  174 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 272  Q
    |||||||||||  ||| ||||||||||| ||||||||||||| |||||| || |||||||| || | ||||| | |||||||| || ||||| ||||| |    
T  32170683 caacaaccaagctttatctcactaagtggggtcggctacatggatcaaattatgtcataatgttatatcatagaccatatttctatccaacttattaatc 32170584  T
Q  273 tctaga 278  Q
    ||||||    
T  32170583 tctaga 32170578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 174 - 284
Target Start/End: Complemental strand, 49042215 - 49042103
Alignment:
Q  174 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcat-aaatcatatttcgattcaactaattaaa 271  Q
    ||||||||||| |||| ||||| ||||| ||||||||||||| |||||| |||| |||| | |||| |||| ||| ||||||| ||| ||||| |||||     
T  49042215 caacaaccaagccttatctcaccaagtggggtcggctacatggatcaaattacgccatagtgttctatcataaaaccatatttggatccaactcattaac 49042116  T
Q  272 ctctagatctttc 284  Q
    ||||| |||||||    
T  49042115 ctctaaatctttc 49042103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 254
Target Start/End: Original strand, 52927838 - 52927933
Alignment:
Q  160 aacaactaaaacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 254  Q
    |||||| | |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| || | |||||| ||||||| |||| |||||||    
T  52927838 aacaacaacaacatcaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattatgccataatgttctgtcgtaaaccatattt 52927933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 283
Target Start/End: Complemental strand, 53519863 - 53519748
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 267  Q
    |||| ||||||||||| |||| ||||||||||| ||||||||||||| ||||||  |||||||| | |||| ||| ||| | ||||| ||| ||||| ||    
T  53519863 aacaacaacaaccaagccttatctcactaagtggggtcggctacatggatcaaatgacgtcatagtgttctatcaaaaaccttatttggatccaactcat 53519764  T
Q  268 taaactctagatcttt 283  Q
    | | ||||| ||||||    
T  53519763 tgacctctaaatcttt 53519748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 282
Target Start/End: Original strand, 311308 - 311422
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaat 267  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||||||||||  ||| |||| | |||| ||| ||| ||||| | ||| ||||||||    
T  311308 aacaacaacaaccaagccttatcccactaagtggggtcggctacatgtatcaaatgacgccatagtgttctatcaaaaaccatatctggatccaactaat 311407  T
Q  268 taaactctagatctt 282  Q
    | | ||||| |||||    
T  311408 tgacctctaaatctt 311422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 253
Target Start/End: Original strand, 23534576 - 23534654
Alignment:
Q  175 aacaaccaagtcttactcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatt 253  Q
    |||||||||| ||||  ||| ||||| ||||| ||||||| |||||| |||| |||||| |||| ||||||||||||||    
T  23534576 aacaaccaagccttatccacaaagtgaggtcgactacatggatcaaattacgccataatgttctatcataaatcatatt 23534654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 246
Target Start/End: Complemental strand, 46148311 - 46148233
Alignment:
Q  169 aacagcaacaaccaagtctt-actcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaa 246  Q
    |||| ||||||||||| ||| || ||||||||| ||||||||||||| |||||| |||| |||||| |||| |||||||    
T  46148311 aacaacaacaaccaagccttgacccactaagtggggtcggctacatggatcaaattacgccataatgttctatcataaa 46148233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 254
Target Start/End: Complemental strand, 48508518 - 48508432
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 254  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| |||||| |||| |||| | |||| ||||||| |||||||    
T  48508518 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccatagtgttctatcataaaccatattt 48508432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 283
Target Start/End: Complemental strand, 49841894 - 49841784
Alignment:
Q  174 caacaaccaagtcttac-tcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 272  Q
    ||||||||||| ||||| || ||| ||| |||| |||||||| |||||| || | |||||| |||| ||||| | ||||||||||| ||||| ||||| |    
T  49841894 caacaaccaagccttacctcgctatgtggggtcagctacatggatcaaattatgccataatgttctatcatataccatatttcgatccaactcattaatc 49841795  T
Q  273 tctagatcttt 283  Q
    | |||||||||    
T  49841794 tttagatcttt 49841784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 254
Target Start/End: Complemental strand, 40991709 - 40991628
Alignment:
Q  174 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 254  Q
    ||||| |||||||||| ||||||||||| |||| |||||||| |||||| |||  |||||| |||| ||||||| |||||||    
T  40991709 caacagccaagtcttatctcactaagtggggtcagctacatggatcaaattacaccataatgttctatcataaaccatattt 40991628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 54365003 - 54365060
Alignment:
Q  197 agtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 254  Q
    |||||||||||||||||| |||||| ||||||||| | |||| ||||||| |||||||    
T  54365003 agtgtggtcggctacatggatcaaattacgtcatagtgttctatcataaaccatattt 54365060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 6780684 - 6780748
Alignment:
Q  190 ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 254  Q
    ||||||||||||||||||||||| | |||||| ||||||||||  |||| ||  |||||||||||    
T  6780684 ctcactaagtgtggtcggctacagggatcaaattacgtcataacgttctatctgaaatcatattt 6780748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 284
Target Start/End: Complemental strand, 15296185 - 15296074
Alignment:
Q  174 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaaac 272  Q
    ||||||||||| |||| | ||||||||| ||||||| ||||| |||||| |||  |||||| |||| ||  ||||||||||| ||| ||| | ||||| |    
T  15296185 caacaaccaagccttatcccactaagtggggtcggccacatggatcaaattacaccataatgttctatccgaaatcatatttggatccaattcattaacc 15296086  T
Q  273 tctagatctttc 284  Q
    |||| |||||||    
T  15296085 tctaaatctttc 15296074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 264
Target Start/End: Complemental strand, 38060992 - 38060901
Alignment:
Q  174 caacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 264  Q
    |||||||||| ||||| | ||||||||| ||||||||||||| |||||| |||| |||  | |||| ||||||| ||||||| ||| |||||    
T  38060992 caacaaccaattcttatcccactaagtggggtcggctacatggatcaaattacgccatggtgttctatcataaaccatatttggatccaact 38060901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 55384065 - 55384119
Alignment:
Q  216 atcaaactacgtcataatattctgtcataaatcatatttcgattcaactaattaa 270  Q
    |||||| ||||||||||  |||| ||||||||||||||| ||||||||| |||||    
T  55384065 atcaaattacgtcataacgttctatcataaatcatatttagattcaacttattaa 55384119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 5852337 - 5852390
Alignment:
Q  202 ggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttc 255  Q
    |||||||| |||| ||||||| ||||||||||| ||| ||||| ||||||||||    
T  5852337 ggtcggctgcatggatcaaacgacgtcataatactctatcatatatcatatttc 5852390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 30797826 - 30797899
Alignment:
Q  174 caacaaccaagtcttactc-actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaa 246  Q
    ||||||||||| |||| || |||||||| |||||| |||||  |||||| ||||||||||| |||| |||||||    
T  30797826 caacaaccaagccttattccactaagtggggtcggttacatagatcaaattacgtcataatgttctatcataaa 30797899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 38850379 - 38850326
Alignment:
Q  193 actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaa 246  Q
    |||||||| ||||||||||||| |||||| ||||||||| | |||| |||||||    
T  38850379 actaagtggggtcggctacatggatcaaattacgtcatagtgttctatcataaa 38850326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 48953453 - 48953514
Alignment:
Q  203 gtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 264  Q
    |||||||||||| || ||| ||||||||| | |||| ||||||||||||||| ||| |||||    
T  48953453 gtcggctacatggattaaattacgtcatagtgttctatcataaatcatatttggatccaact 48953514  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 264
Target Start/End: Complemental strand, 5169115 - 5169019
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 264  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||  ||| |||| | |||| ||| ||| ||||||| ||| |||||    
T  5169115 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcaaaaaccatatttggatccaact 5169019  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 254
Target Start/End: Original strand, 42510041 - 42510101
Alignment:
Q  194 ctaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 254  Q
    ||||||| ||||||||||||| |||||| |||| |||||| |||  ||||||| |||||||    
T  42510041 ctaagtggggtcggctacatggatcaaattacgccataatgttcaatcataaaccatattt 42510101  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 236
Target Start/End: Original strand, 49503567 - 49503635
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatatt 236  Q
    |||| ||||||||||| |||| | ||||||||  ||||||||||||| |||||| |||| |||||||||    
T  49503567 aacaacaacaaccaagccttatcccactaagtagggtcggctacatggatcaaattacgccataatatt 49503635  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 49888445 - 49888405
Alignment:
Q  193 actaagtgtggtcggctacatgtatcaaactacgtcataat 233  Q
    |||||||| ||||||||||||| |||||| |||||||||||    
T  49888445 actaagtggggtcggctacatggatcaaattacgtcataat 49888405  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 244
Target Start/End: Complemental strand, 52139083 - 52139007
Alignment:
Q  169 aacagcaacaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcata 244  Q
    |||| ||||||||||| |||| | ||||||||| ||||||||||||| ||||||  |||||||| | |||| |||||    
T  52139083 aacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaataacgtcatagtgttctatcata 52139007  T

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Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 264
Target Start/End: Complemental strand, 82996 - 82905
Alignment:
Q  174 caacaaccaagtcttactc-actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatatttcgattcaact 264  Q
    ||||||||||| |||| || | |||||| ||||||||||||| ||||||  |||||||| | |||| ||||||||||||||| ||| |||||    
T  82996 caacaaccaagccttattccattaagtggggtcggctacatggatcaaatgacgtcatagtgttctatcataaatcatatttggatccaact 82905  T

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Target: scaffold0024; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 48140 - 48201
Alignment:
Q  193 actaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatattt 254  Q
    ||||||||  |||||||||||| |||||| |||| ||||||||||| ||||| | |||||||    
T  48140 actaagtggagtcggctacatggatcaaattacgccataatattctatcatacaccatattt 48201  T

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Target: scaffold0491 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 3713 - 3650
Alignment:
Q  176 acaaccaagtctta-ctcactaagtgtggtcggctacatgtatcaaactacgtcataatattct 238  Q
    |||||||||||||| | ||||||||| |||||||||| || |||||| ||||||||||| ||||    
T  3713 acaaccaagtcttatcccactaagtggggtcggctacttggatcaaattacgtcataatgttct 3650  T

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Target: scaffold0050 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 58249 - 58309
Alignment:
Q  192 cactaagtgtggtcggctacatgtatcaaactacgtcataatattctgtcataaatcatat 252  Q
    ||||||||  ||||||||||||| |||||| |||| |||||| |||| ||||||| |||||    
T  58249 cactaagttgggtcggctacatggatcaaattacgacataatgttctatcataaaccatat 58309  T

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