View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1273_low_16 (Length: 382)

Name: NF1273_low_16
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1273_low_16
NF1273_low_16
[»] chr3 (30 HSPs)
chr3 (57-328)||(8861176-8861447)
chr3 (57-328)||(11159925-11160196)
chr3 (57-328)||(10889196-10889467)
chr3 (57-326)||(11130934-11131203)
chr3 (57-326)||(11148762-11149031)
chr3 (66-326)||(10375762-10376022)
chr3 (66-320)||(9838759-9839013)
chr3 (66-320)||(9849637-9849891)
chr3 (94-326)||(10088682-10088914)
chr3 (94-326)||(10195565-10195797)
chr3 (94-320)||(10663424-10663650)
chr3 (94-326)||(10031895-10032127)
chr3 (94-326)||(10126820-10127052)
chr3 (66-326)||(10433961-10434221)
chr3 (94-326)||(10580493-10580725)
chr3 (64-325)||(11769127-11769388)
chr3 (94-326)||(10363743-10363975)
chr3 (94-326)||(10260590-10260822)
chr3 (100-275)||(10527280-10527455)
chr3 (57-255)||(13170994-13171192)
chr3 (57-255)||(13332867-13333065)
chr3 (94-326)||(10184134-10184366)
chr3 (66-254)||(13289629-13289817)
chr3 (57-255)||(13344052-13344250)
chr3 (102-275)||(10517407-10517580)
chr3 (66-255)||(13160943-13161132)
chr3 (100-275)||(10500499-10500674)
chr3 (100-275)||(11781954-11782129)
chr3 (66-266)||(10077221-10077421)
chr3 (57-119)||(11153681-11153743)
[»] chr2 (1 HSPs)
chr2 (66-326)||(26906789-26907049)
[»] chr4 (1 HSPs)
chr4 (100-275)||(17852895-17853070)
[»] chr8 (2 HSPs)
chr8 (139-274)||(11484961-11485096)
chr8 (139-248)||(44957699-44957808)
[»] scaffold0002 (2 HSPs)
scaffold0002 (57-255)||(135796-135994)
scaffold0002 (57-255)||(145847-146045)
[»] chr5 (1 HSPs)
chr5 (319-376)||(3920868-3920925)
[»] chr1 (1 HSPs)
chr1 (98-255)||(825871-826028)
[»] chr7 (1 HSPs)
chr7 (57-276)||(29836585-29836804)
[»] chr6 (1 HSPs)
chr6 (92-253)||(31679676-31679837)


Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 57 - 328
Target Start/End: Complemental strand, 8861447 - 8861176
Alignment:
Q  57 tcgaataatatcaagattattgttttcccatgcccttgaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaa 156  Q
    ||||| || ||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||  || ||||||||||||||||||||||||||    
T  8861447 tcgaagaaaatcaagattattgttttcccaagctcttgaagtgacagattcaagaagagttttagttacagttgaaatatcaaaatcctctgatacacaa 8861348  T
Q  157 gcccatgctttgagatcaaggtgctcttgaactttttcatcattgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcag 256  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  8861347 gcccatgctttgagatcaaagtgctcttgaactttttcatcattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcaa 8861248  T
Q  257 caacgcctatattgttattgccggtgttactctctgatagcagcatgttcattattgtctctttatcatcat 328  Q
    |||| || ||||||||||| |  ||| | ||||||||||||| ||||||||||| |||||||||||||||||    
T  8861247 caacaccgatattgttattcctagtgctgctctctgatagcaacatgttcattactgtctctttatcatcat 8861176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 57 - 328
Target Start/End: Original strand, 11159925 - 11160196
Alignment:
Q  57 tcgaataatatcaagattattgttttcccatgcccttgaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaa 156  Q
    ||||| || ||||||||||||| ||||||| || |||||||||||||||||||| ||||||||||||||   |||||||||||||||||| |||||||||    
T  11159925 tcgaagaaaatcaagattattggtttcccaagctcttgaagtgacagattcaagaagagttttagttacagataaaatatcaaaatcctcagatacacaa 11160024  T
Q  157 gcccatgctttgagatcaaggtgctcttgaactttttcatcattgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcag 256  Q
    ||||||||||||| |||||  || |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  11160025 gcccatgctttgaaatcaaaatgatcttgaactttttcattattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcaa 11160124  T
Q  257 caacgcctatattgttattgccggtgttactctctgatagcagcatgttcattattgtctctttatcatcat 328  Q
    |||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  11160125 caacgcctatattgttattgccagtgctactctctgatagcaacatgttcattattgtctctttatcatcat 11160196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 57 - 328
Target Start/End: Complemental strand, 10889467 - 10889196
Alignment:
Q  57 tcgaataatatcaagattattgttttcccatgcccttgaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaa 156  Q
    ||||| || ||| ||||||||||||||||| || |||||||| ||||||||||| ||||||||||||||  ||||||||||||||||||| |||||||||    
T  10889467 tcgaagaaaatctagattattgttttcccaagctcttgaagtcacagattcaagaagagttttagttacagttaaaatatcaaaatcctcagatacacaa 10889368  T
Q  157 gcccatgctttgagatcaaggtgctcttgaactttttcatcattgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcag 256  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  10889367 gcccatgctttgagatcaaagtgctcttgaactttttcatcattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcaa 10889268  T
Q  257 caacgcctatattgttattgccggtgttactctctgatagcagcatgttcattattgtctctttatcatcat 328  Q
    |||| || ||||||||||| |  ||| | ||||||||||||| |||||||||||||||||||||||||||||    
T  10889267 caacaccgatattgttattcctagtgctgctctctgatagcaacatgttcattattgtctctttatcatcat 10889196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 57 - 326
Target Start/End: Original strand, 11130934 - 11131203
Alignment:
Q  57 tcgaataatatcaagattattgttttcccatgcccttgaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaa 156  Q
    ||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11130934 tcgaagaaaatcaagattattgttttcccaagcccttgaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctccgatacacaa 11131033  T
Q  157 gcccatgctttgagatcaaggtgctcttgaactttttcatcattgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcag 256  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||  || ||||||||| || ||||| |||||||||||||||||||||||||||     
T  11131034 gcccatgctttgagatcaaagtgttcttgaactttttcatcattgtaagcaatttgtgcaagggttgtttttccgacacctcccatacctaaaattgcaa 11131133  T
Q  257 caacgcctatattgttattgccggtgttactctctgatagcagcatgttcattattgtctctttatcatc 326  Q
    |||| || |||||||||||||  ||| | |||| |||||||| ||||||| ||||||||||||| |||||    
T  11131134 caacaccgatattgttattgctagtgctgctctttgatagcaacatgttcgttattgtctctttgtcatc 11131203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 57 - 326
Target Start/End: Original strand, 11148762 - 11149031
Alignment:
Q  57 tcgaataatatcaagattattgttttcccatgcccttgaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaa 156  Q
    ||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11148762 tcgaagaaaatcaagattattgttttcccaagcccttgaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctccgatacacaa 11148861  T
Q  157 gcccatgctttgagatcaaggtgctcttgaactttttcatcattgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcag 256  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||  || ||||||||| || ||||| |||||||||||||||||||||||||||     
T  11148862 gcccatgctttgagatcaaagtgttcttgaactttttcatcattgtaagcaatttgtgcaagggttgtttttccgacacctcccatacctaaaattgcaa 11148961  T
Q  257 caacgcctatattgttattgccggtgttactctctgatagcagcatgttcattattgtctctttatcatc 326  Q
    |||| || |||||||||||||  ||| | |||| |||||||| ||||||| ||||| ||||||| |||||    
T  11148962 caacaccgatattgttattgctagtgctgctctttgatagcaacatgttcgttattatctctttgtcatc 11149031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 66 - 326
Target Start/End: Original strand, 10375762 - 10376022
Alignment:
Q  66 atcaagattattgttttcccatgcccttgaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaagcccatgct 165  Q
    ||||||||||||| | |||||||  ||||||||||| |||||||||||||  || |||||||| ||||||||||||||||| || ||||||||||||||     
T  10375762 atcaagattattgctatcccatgttcttgaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagcccatgcc 10375861  T
Q  166 ttgagatcaaggtgctcttgaactttttcatcattgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcagcaacgccta 265  Q
    || | |||||  || | ||||||||||||||||||||||| |||||||||||| || ||||| || | ||||||||| || ||||||||| |||| ||||    
T  10375862 ttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgtgcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacaccta 10375961  T
Q  266 tattgttattgccggtgttactctctgatagcagcatgttcattattgtctctttatcatc 326  Q
    |||| ||||     ||||   |||||||||||| |||||||||||| || |||||||||||    
T  10375962 tattattatgcgatgtgtctgtctctgatagcaacatgttcattatagtgtctttatcatc 10376022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 66 - 320
Target Start/End: Complemental strand, 9839013 - 9838759
Alignment:
Q  66 atcaagattattgttttcccatgcccttgaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaagcccatgct 165  Q
    ||||||||||||| | |||||||   | |||||||| |||||||||||||  || |||||||| ||||||||||||||||| || ||||||||||| ||     
T  9839013 atcaagattattgctatcccatgttatggaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagcccacgcc 9838914  T
Q  166 ttgagatcaaggtgctcttgaactttttcatcattgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcagcaacgccta 265  Q
     | | |||||  || | |||||||| |||||||||||||| |||||| ||||| || ||||| || | ||||||||| || ||||||||| |||| ||||    
T  9838913 ctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacaccta 9838814  T
Q  266 tattgttattgccggtgttactctctgatagcagcatgttcattattgtctcttt 320  Q
    ||||||||| |   ||||  || |  ||||||| |||||||||||||||||||||    
T  9838813 tattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt 9838759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 66 - 320
Target Start/End: Complemental strand, 9849891 - 9849637
Alignment:
Q  66 atcaagattattgttttcccatgcccttgaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaagcccatgct 165  Q
    ||||||||||||| | |||||||   | |||||||| |||||||||||||  || |||||||| ||||||||||||||||| || ||||||||||| ||     
T  9849891 atcaagattattgctatcccatgttatggaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagcccacgcc 9849792  T
Q  166 ttgagatcaaggtgctcttgaactttttcatcattgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcagcaacgccta 265  Q
     | | |||||  || | |||||||| |||||||||||||| |||||| ||||| || ||||| || | ||||||||| || ||||||||| |||| ||||    
T  9849791 ctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacaccta 9849692  T
Q  266 tattgttattgccggtgttactctctgatagcagcatgttcattattgtctcttt 320  Q
    ||||||||| |   ||||  || |  ||||||| |||||||||||||||||||||    
T  9849691 tattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctcttt 9849637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 94 - 326
Target Start/End: Complemental strand, 10088914 - 10088682
Alignment:
Q  94 gaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaagcccatgctttgagatcaaggtgctcttgaacttttt 193  Q
    ||||||||||||||||||||||  || |||||||| | ||||||||||||||| || |||||| ||||||| || | |||||  || | |||||||| ||    
T  10088914 gaagtgacagattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatggtgttgaacttctt 10088815  T
Q  194 catcattgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcagcaacgcctatattgttattgccgg-tgttactctc-- 290  Q
     ||||||||||| |||||| ||||| || ||||| || | ||||||||| |||||||||||| |||| ||||||   |||||| ||| |||| |||||      
T  10088814 tatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcctaaaattgcaacaacacctata---ttattgtcggttgtttctctctt 10088718  T
Q  291 tgatagcagcatgttcattattgtctctttatcatc 326  Q
    ||| |||| |||||||||||||||||||||||||||    
T  10088717 tgaaagcaacatgttcattattgtctctttatcatc 10088682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 94 - 326
Target Start/End: Complemental strand, 10195797 - 10195565
Alignment:
Q  94 gaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaagcccatgctttgagatcaaggtgctcttgaacttttt 193  Q
    ||||||||||||||||||||||  || |||||||| | ||||||||||||||| || |||||| ||||||| || | |||||  || | |||||||| ||    
T  10195797 gaagtgacagattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatggtgttgaacttctt 10195698  T
Q  194 catcattgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcagcaacgcctatattgttattgccgg-tgttactctc-- 290  Q
     ||||||||||| |||||| ||||| || ||||| || | ||||||||| |||||||||||| |||| ||||||   |||||| ||| |||| |||||      
T  10195697 tatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcctaaaattgcaacaacacctata---ttattgtcggttgtttctctctt 10195601  T
Q  291 tgatagcagcatgttcattattgtctctttatcatc 326  Q
    ||| |||| |||||||||||||||||||||||||||    
T  10195600 tgaaagcaacatgttcattattgtctctttatcatc 10195565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 94 - 320
Target Start/End: Complemental strand, 10663650 - 10663424
Alignment:
Q  94 gaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaagcccatgctttgagatcaaggtgctcttgaacttttt 193  Q
    ||||||||||||||||||||||  || |||||||| | ||||||||||||||| || |||||| ||||||| || | |||||  || | |||||||| ||    
T  10663650 gaagtgacagattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatgttgttgaacttctt 10663551  T
Q  194 catcattgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcagcaacgcctatattgttattgccggtgttactctctga 293  Q
     ||||||||||| |||||| ||||| || ||||| || | ||||||||| || ||||||||| |||| |||||||| |||| |   ||||  |||| |||    
T  10663550 tatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtgtctctctgtga 10663451  T
Q  294 tagcagcatgttcattattgtctcttt 320  Q
    ||||| |||||||||||||||||||||    
T  10663450 tagcaacatgttcattattgtctcttt 10663424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 94 - 326
Target Start/End: Complemental strand, 10032127 - 10031895
Alignment:
Q  94 gaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaagcccatgctttgagatcaaggtgctcttgaacttttt 193  Q
    ||||||||||||||||||||||  || |||||||| | ||||||||||||||| || ||||||||||| || || | |||||  || | |||||||| ||    
T  10032127 gaagtgacagattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaagcccaggccttcaaatcaaaatgttgttgaacttctt 10032028  T
Q  194 catcattgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcagcaacgcctatattgttattgccggtgttactctctga 293  Q
     ||||||||||| |||||| ||||| || ||||| || | ||||||||| || ||||||||| |||| |||||||| |||| |   | ||  |||| |||    
T  10032027 tatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattattatgggatgcgtctctctgtga 10031928  T
Q  294 tagcagcatgttcattattgtctctttatcatc 326  Q
    ||||| ||||||||||||||||||||| |||||    
T  10031927 tagcaacatgttcattattgtctctttgtcatc 10031895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 94 - 326
Target Start/End: Complemental strand, 10127052 - 10126820
Alignment:
Q  94 gaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaagcccatgctttgagatcaaggtgctcttgaacttttt 193  Q
    ||||||||||||||||||||||  || |||||||| | ||||||||||||||| || |||||| ||||||| || | |||||  || | |||||||| ||    
T  10127052 gaagtgacagattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatgttgttgaacttctt 10126953  T
Q  194 catcattgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcagcaacgcctatattgttattgccggtgttactctctga 293  Q
     ||||||||||| |||||| ||||| || ||||| || | ||||||||| || ||||||||| |||| |||||||| |||| |   ||||  ||||  ||    
T  10126952 tatcattgtaaacaagttgggcaagggtagtttttcccaaacctcccatgcccaaaattgcaacaacacctatattattatgggatgtgtctctctgaga 10126853  T
Q  294 tagcagcatgttcattattgtctctttatcatc 326  Q
    ||||| ||||||||||||||||||||| |||||    
T  10126852 tagcaacatgttcattattgtctctttgtcatc 10126820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 66 - 326
Target Start/End: Original strand, 10433961 - 10434221
Alignment:
Q  66 atcaagattattgttttcccatgcccttgaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaagcccatgct 165  Q
    ||||||||||||| | ||||| |  || |||||||| |||||||||||||  || |||||| | ||||||||||||||||  || ||||||||||| ||     
T  10433961 atcaagattattgctatcccaagttctggaagtgaccgattcaaggagagacttggttactttcaaaatatcaaaatcctgagacacacaagcccaggcc 10434060  T
Q  166 ttgagatcaaggtgctcttgaactttttcatcattgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcagcaacgccta 265  Q
    || | |||||  || | |||||||| || ||||||||||| |||||| ||||| || ||||| || | ||||||||| |||||||||||| |||| ||||    
T  10434061 ttcaaatcaaaatggtgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcctaaaattgcaacaacaccta 10434160  T
Q  266 tattgttattgccggtgttactctctgatagcagcatgttcattattgtctctttatcatc 326  Q
    | || ||||     ||||| |||| |||||||| ||||||||||||||||||||| |||||    
T  10434161 tcttattatgagttgtgtttctctgtgatagcaacatgttcattattgtctctttgtcatc 10434221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 94 - 326
Target Start/End: Complemental strand, 10580725 - 10580493
Alignment:
Q  94 gaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaagcccatgctttgagatcaaggtgctcttgaacttttt 193  Q
    ||||||||||||||||||||||  || |||||||| | ||||||||||||||| || |||||| |||| || || |  ||||  || | |||||||| ||    
T  10580725 gaagtgacagattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaaacccacgccttcatgtcaaaatgttgttgaacttctt 10580626  T
Q  194 catcattgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcagcaacgcctatattgttattgccggtgttactctctga 293  Q
     ||||||||||| |||||| ||||| || ||||| || | ||||||||| || ||||||||| |||| |||||||| |||| |   ||||| |||| |||    
T  10580625 tatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattattatggattgtgtttctctgtga 10580526  T
Q  294 tagcagcatgttcattattgtctctttatcatc 326  Q
    ||||| ||||||||||||||||||||| |||||    
T  10580525 tagcaacatgttcattattgtctctttgtcatc 10580493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 64 - 325
Target Start/End: Complemental strand, 11769388 - 11769127
Alignment:
Q  64 atatcaagattattgttttcccatgcccttgaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaagcccatg 163  Q
    ||||||||||||||| | ||||| |  ||||||||||| |||||||||||||   | |||||||| | ||||||||||||||| || || ||||||||||    
T  11769388 atatcaagattattgctatcccaagttcttgaagtgaccgattcaaggagagacctggttactctcataatatcaaaatcctcagacacgcaagcccatg 11769289  T
Q  164 ctttgagatcaaggtgctcttgaactttttcatcattgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcagcaacgcc 263  Q
    | || | |||||  |  | |||||||| || ||||||||| | |||||| ||||| || ||||| || | ||||||||| || ||||||||| |||| ||    
T  11769288 ccttcaaatcaaaatattgttgaacttctttatcattgtagacaagttgagcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacc 11769189  T
Q  264 tatattgttattgccggtgttactctctgatagcagcatgttcattattgtctctttatcat 325  Q
    |||||| |||| |   ||||  |||| |||||||| ||||||||||||||||||||| ||||    
T  11769188 tatattattatggattgtgtctctctgtgatagcaacatgttcattattgtctctttgtcat 11769127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 94 - 326
Target Start/End: Original strand, 10363743 - 10363975
Alignment:
Q  94 gaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaagcccatgctttgagatcaaggtgctcttgaacttttt 193  Q
    |||||| |||||||||||||||  || |||||||| | ||||||||||||||| || |||||| ||||||| || | |||||  || | |||||||| ||    
T  10363743 gaagtggcagattcaaggagagactttgttactctcataatatcaaaatcctcagagacacaaacccatgccttcaaatcaaaatgttgttgaacttctt 10363842  T
Q  194 catcattgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcagcaacgcctatattgttattgccgg-tgttactctc-- 290  Q
     ||||||||||| |||||| ||||| || ||||| || | ||||||||| |||||||||||| |||| ||||||   |||||| ||| |||| |||||      
T  10363843 tatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcctaaaattgcaacaacacctata---ttattgtcggttgtttctctctt 10363939  T
Q  291 tgatagcagcatgttcattattgtctctttatcatc 326  Q
    ||| |||| ||||||||||||||||||||| |||||    
T  10363940 tgaaagcaacatgttcattattgtctctttgtcatc 10363975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 94 - 326
Target Start/End: Complemental strand, 10260822 - 10260590
Alignment:
Q  94 gaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaagcccatgctttgagatcaaggtgctcttgaacttttt 193  Q
    |||||||| |||||||||||||  || |||||||| | ||||||||||||||| || ||||||||||| || || |  ||||  || | |||||||| ||    
T  10260822 gaagtgactgattcaaggagagacttggttactctcataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctt 10260723  T
Q  194 catcattgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcagcaacgcctatattgttattgccggtgttactctctga 293  Q
     ||||||||||| |||||| ||||| || ||||| || | ||||||||| || ||||||||| |||| |||||||| || |||   || |  |||| |||    
T  10260722 tatcattgtaaacaagttgagcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattattgttggttgtttctctctgtga 10260623  T
Q  294 tagcagcatgttcattattgtctctttatcatc 326  Q
    ||||| ||||||||||||||||||||| |||||    
T  10260622 tagcaacatgttcattattgtctctttgtcatc 10260590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 100 - 275
Target Start/End: Complemental strand, 10527455 - 10527280
Alignment:
Q  100 acagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaagcccatgctttgagatcaaggtgctcttgaactttttcatcat 199  Q
    |||||||||| |||||  || |||||||| | || ||| ||||||||||||||| || |||| || ||||||||||  || | || ||| ||||||||||    
T  10527455 acagattcaatgagagacttggttactctcacaacatcgaaatcctctgatacataaacccaggccttgagatcaaaatggtgttcaaccttttcatcat 10527356  T
Q  200 tgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcagcaacgcctatattgttatt 275  Q
    |||||| |||||||||||| || ||||||||||||||||||||||| || |||||| |||| |||| ||| |||||    
T  10527355 tgtaaacaagttgtgcaagggttgttttaccgacacctcccatacccaagattgcaacaacacctaaattattatt 10527280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 57 - 255
Target Start/End: Complemental strand, 13171192 - 13170994
Alignment:
Q  57 tcgaataatatcaagattattgttttcccatgcccttgaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaa 156  Q
    ||||| || |||||||||||||||||| |   | |||||||||||||||||| | |  |||||||||||||| | |||||| |||||||| |||||||||    
T  13171192 tcgaagaaaatcaagattattgttttcaccacctcttgaagtgacagattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaa 13171093  T
Q  157 gcccatgctttgagatcaaggtgctcttgaactttttcatcattgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgca 255  Q
     ||||  |||| |||||||  || |||||||||| || |||||| |||| |||||| ||||| || ||||| || ||||| |||||||| |||||||||    
T  13171092 acccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgca 13170994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 57 - 255
Target Start/End: Complemental strand, 13333065 - 13332867
Alignment:
Q  57 tcgaataatatcaagattattgttttcccatgcccttgaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaa 156  Q
    ||||| || |||||||||||||||||| |   | |||||||||||||||||| | |  |||||||||||||| | |||||| |||||||| |||||||||    
T  13333065 tcgaagaaaatcaagattattgttttcaccacctcttgaagtgacagattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaa 13332966  T
Q  157 gcccatgctttgagatcaaggtgctcttgaactttttcatcattgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgca 255  Q
     ||||  |||| |||||||  || |||||||||| || |||||| |||| |||||| ||||| || ||||| || ||||| |||||||| |||||||||    
T  13332965 acccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgca 13332867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 94 - 326
Target Start/End: Complemental strand, 10184366 - 10184134
Alignment:
Q  94 gaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaagcccatgctttgagatcaaggtgctcttgaacttttt 193  Q
    ||||||||||||||||||||||  || |||||||| | ||||||||||||||| || ||||||||||| ||  | | |||||  || | |||||||| ||    
T  10184366 gaagtgacagattcaaggagagacttggttactctcataatatcaaaatcctcggacacacaagcccacgccctcatatcaaaatgttgttgaacttctt 10184267  T
Q  194 catcattgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcagcaacgcctatattgttattgccggtgttactctctga 293  Q
     ||||||||||| |||||| ||||| || ||||| || | ||||||||| || ||||||||| |||| ||||||   |||| |   ||||  |||| |||    
T  10184266 tatcattgtaaacaagttgagcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatagcattatgggttgtgtctctctgtga 10184167  T
Q  294 tagcagcatgttcattattgtctctttatcatc 326  Q
     |||| ||||||||||||||||||||| |||||    
T  10184166 cagcaacatgttcattattgtctctttgtcatc 10184134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 66 - 254
Target Start/End: Complemental strand, 13289817 - 13289629
Alignment:
Q  66 atcaagattattgttttcccatgcccttgaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaagcccatgct 165  Q
    ||||||||||||| |||| |   | |||||||||||||||||| | |  |||||||||||||| |||||||| |||||||| ||||||||| ||||  ||    
T  13289817 atcaagattattgctttcaccacctcttgaagtgacagattcatgaatggttttagttactctcaaaatatcgaaatcctccgatacacaaacccagact 13289718  T
Q  166 ttgagatcaaggtgctcttgaactttttcatcattgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgc 254  Q
    || |||||||  || |||||||||| || |||||| |||| |||||| ||||| || ||||| || ||||| |||||||| ||||||||    
T  13289717 ttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgc 13289629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 57 - 255
Target Start/End: Complemental strand, 13344250 - 13344052
Alignment:
Q  57 tcgaataatatcaagattattgttttcccatgcccttgaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaa 156  Q
    ||||| || |||||||||||||||||| |   | |||||||||||||||||| | |  |||||||| ||||| | |||||| |||||||| |||||||||    
T  13344250 tcgaagaaaatcaagattattgttttcaccacctcttgaagtgacagattcatgaatggttttagtgactctcagaatatcgaaatcctccgatacacaa 13344151  T
Q  157 gcccatgctttgagatcaaggtgctcttgaactttttcatcattgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgca 255  Q
     ||||  |||| |||||||  || |||||||||| || |||||| |||| |||||| ||||| || ||||| || ||||| |||||||| |||||||||    
T  13344150 acccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgca 13344052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 102 - 275
Target Start/End: Complemental strand, 10517580 - 10517407
Alignment:
Q  102 agattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaagcccatgctttgagatcaaggtgctcttgaactttttcatcattg 201  Q
    ||||||||||| ||  || ||| |||| | || |||||||||||| ||||||||| |||| ||||||| |||||  || | || ||||||| ||||||||    
T  10517580 agattcaaggatagacttggttgctctaataacatcaaaatcctcagatacacaaacccaggctttgaaatcaaaatgttgttcaacttttgcatcattg 10517481  T
Q  202 taaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcagcaacgcctatattgttatt 275  Q
    |||| ||  |||||||| |||||||||||||| ||||||||||| | |||||||||||| |||| ||| |||||    
T  10517480 taaacaaactgtgcaagggtcgttttaccgacgcctcccatacccacaattgcagcaacacctaaattattatt 10517407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 66 - 255
Target Start/End: Complemental strand, 13161132 - 13160943
Alignment:
Q  66 atcaagattattgttttcccatgcccttgaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaagcccatgct 165  Q
    ||||||||||||| |||| |  || ||||| |||||||||||| | |  |||||||||||||| | |||||| |||||||| ||||||||| ||||  ||    
T  13161132 atcaagattattgctttcgccagctcttgaggtgacagattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaaacccagact 13161033  T
Q  166 ttgagatcaaggtgctcttgaactttttcatcattgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgca 255  Q
    || |||||||  || |||||||||| || |||||| |||| |||||| ||||| || ||||| || ||||| |||||||| |||||||||    
T  13161032 ttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgca 13160943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 100 - 275
Target Start/End: Complemental strand, 10500674 - 10500499
Alignment:
Q  100 acagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaagcccatgctttgagatcaaggtgctcttgaactttttcatcat 199  Q
    |||||||||||||||| ||| |||| ||| | || ||| |||||||| | |||||||  |||||| || |||||||  || |||| || ||| || || |    
T  10500674 acagattcaaggagagatttggttattctcacaacatcgaaatcctccggtacacaaatccatgccttcagatcaaaatgttcttcaattttatcgtcgt 10500575  T
Q  200 tgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcagcaacgcctatattgttatt 275  Q
    |||||| |||||| |||||||| ||||||||||| ||||||||||| ||||||||| |||| |||| ||| |||||    
T  10500574 tgtaaacaagttgagcaagtgttgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattatt 10500499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 100 - 275
Target Start/End: Original strand, 11781954 - 11782129
Alignment:
Q  100 acagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaagcccatgctttgagatcaaggtgctcttgaactttttcatcat 199  Q
    ||||||||||||||||  || |||| ||| | || ||| |||||||| ||||||||| ||||  |||||| |||||  || | || ||||||  ||||||    
T  11781954 acagattcaaggagagacttggttattctaacaacatcgaaatcctccgatacacaaacccagactttgaaatcaaaatgttgttcaactttcacatcat 11782053  T
Q  200 tgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcagcaacgcctatattgttatt 275  Q
    |||||| ||| |||||||| |||||||||||||| ||||||||||| ||||||||  |||| |||| ||| |||||    
T  11782054 tgtaaacaagctgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcgacaacacctaaattattatt 11782129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 66 - 266
Target Start/End: Complemental strand, 10077421 - 10077221
Alignment:
Q  66 atcaagattattgttttcccatgcccttgaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaagcccatgct 165  Q
    |||||||| |||||| ||||| |  || |||||||  |||||||||||||  || |||||||| | ||||||||||||||| || ||||||||||||||     
T  10077421 atcaagatcattgttatcccaagttctagaagtgatcgattcaaggagagacttggttactctcataatatcaaaatcctcagacacacaagcccatgcc 10077322  T
Q  166 ttgagatcaaggtgctcttgaactttttcatcattgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcagcaacgccta 265  Q
    |  | |||||  || | | ||||||| | ||||||||||| |||||| ||||| || ||||| || | ||||||||| || ||||||||| |||| ||||    
T  10077321 tgcaaatcaaaatggtatcgaactttataatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacaccta 10077222  T
Q  266 t 266  Q
    |    
T  10077221 t 10077221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 11153681 - 11153743
Alignment:
Q  57 tcgaataatatcaagattattgttttcccatgcccttgaagtgacagattcaaggagagtttt 119  Q
    ||||| || ||||||||| ||  ||||  |||| |||||||||||||||||||||||||||||    
T  11153681 tcgaagaaaatcaagattgttactttcatatgctcttgaagtgacagattcaaggagagtttt 11153743  T

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Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 66 - 326
Target Start/End: Complemental strand, 26907049 - 26906789
Alignment:
Q  66 atcaagattattgttttcccatgcccttgaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaagcccatgct 165  Q
    ||||||||||||| | ||||| |  || |||||||| ||||||||||||| ||| |||||||| | ||||||||||||||| || |||||| |||||||     
T  26907049 atcaagattattggtatcccaagttctggaagtgaccgattcaaggagagatttggttactctcataatatcaaaatcctcagacacacaaacccatgcc 26906950  T
Q  166 ttgagatcaaggtgctcttgaactttttcatcattgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcagcaacgccta 265  Q
    || | |||||  |||  |||||||| || ||||||||||| |||||| ||||| || ||||| || | ||||||||| || ||||||||| |||| ||||    
T  26906949 ttcaaatcaaaatgccgttgaacttctttatcattgtaaagaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacaccta 26906850  T
Q  266 tattgttattgccggtgttactctctgatagcagcatgttcattattgtctctttatcatc 326  Q
    |||| |||| |   ||||  ||||||||||||| ||| ||||||||||||||||| |||||    
T  26906849 tattattatgggttgtgtctctctctgatagcaacatattcattattgtctctttgtcatc 26906789  T

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Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 100 - 275
Target Start/End: Original strand, 17852895 - 17853070
Alignment:
Q  100 acagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaagcccatgctttgagatcaaggtgctcttgaactttttcatcat 199  Q
    ||||||||||||||||  || |||||||| | || ||||||||| |||||||||||| |||| |||||||||||||  || | || ||| ||||||||||    
T  17852895 acagattcaaggagagacttggttactctcacaacatcaaaatcttctgatacacaaacccaggctttgagatcaaaatgatgttcaaccttttcatcat 17852994  T
Q  200 tgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcagcaacgcctatattgttatt 275  Q
    |||||| ||| |||||||| ||||||||||||||||||||||| || || |||||| |||| |||| |||||||||    
T  17852995 tgtaaacaagctgtgcaagggtcgttttaccgacacctcccatccccaatattgcaacaacacctaaattgttatt 17853070  T

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Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 139 - 274
Target Start/End: Complemental strand, 11485096 - 11484961
Alignment:
Q  139 aaatcctctgatacacaagcccatgctttgagatcaaggtgctcttgaactttttcatcattgtaaataagttgtgcaagtgtcgttttaccgacacctc 238  Q
    |||||||| ||||||||| ||||||||||||||||||  |||| || |||||||||||| ||||||| |||||||||||| |||||||||||||| ||||    
T  11485096 aaatcctccgatacacaaacccatgctttgagatcaaaatgctgttcaactttttcatcgttgtaaacaagttgtgcaagggtcgttttaccgacgcctc 11484997  T
Q  239 ccatacctaaaattgcagcaacgcctatattgttat 274  Q
    ||||| | ||||||||| |||| |||| ||| ||||    
T  11484996 ccataaccaaaattgcaacaacacctaaattattat 11484961  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 139 - 248
Target Start/End: Original strand, 44957699 - 44957808
Alignment:
Q  139 aaatcctctgatacacaagcccatgctttgagatcaaggtgctcttgaactttttcatcattgtaaataagttgtgcaagtgtcgttttaccgacacctc 238  Q
    |||||||||||||||||   ||||||||||||||| |  || | || |||||||  ||||||||||| ||||||||| || |||||||||||||||||||    
T  44957699 aaatcctctgatacacatatccatgctttgagatcgaaatgttgttcaacttttatatcattgtaaacaagttgtgcgagagtcgttttaccgacacctc 44957798  T
Q  239 ccatacctaa 248  Q
    ||||||||||    
T  44957799 ccatacctaa 44957808  T

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Target: scaffold0002 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 57 - 255
Target Start/End: Original strand, 135796 - 135994
Alignment:
Q  57 tcgaataatatcaagattattgttttcccatgcccttgaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaa 156  Q
    ||||| || |||||||||||||||||| |   | |||||||||||||||||| | |  |||||||||||||| | |||||| |||||||| |||||||||    
T  135796 tcgaagaaaatcaagattattgttttcaccacctcttgaagtgacagattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaa 135895  T
Q  157 gcccatgctttgagatcaaggtgctcttgaactttttcatcattgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgca 255  Q
     ||||  |||| |||||||  || |||||||||| || |||||| |||| |||||| ||||| || ||||| || ||||| |||||||| |||||||||    
T  135896 acccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgca 135994  T

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Target: scaffold0002; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 57 - 255
Target Start/End: Original strand, 145847 - 146045
Alignment:
Q  57 tcgaataatatcaagattattgttttcccatgcccttgaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaa 156  Q
    ||||| || |||||||||||||||||| |   | |||||||||||||||||| | |  |||||||||||||| | |||||| |||||||| |||||||||    
T  145847 tcgaagaaaatcaagattattgttttcaccacctcttgaagtgacagattcatgaatggttttagttactctcagaatatcgaaatcctccgatacacaa 145946  T
Q  157 gcccatgctttgagatcaaggtgctcttgaactttttcatcattgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgca 255  Q
     ||||  |||| |||||||  || |||||||||| || |||||| |||| |||||| ||||| || ||||| || ||||| |||||||| |||||||||    
T  145947 acccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgccaacaccgcccatacccaaaattgca 146045  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 319 - 376
Target Start/End: Original strand, 3920868 - 3920925
Alignment:
Q  319 ttatcatcatagctactatgacatatttccattgtattcatagtttgaatgatcaaag 376  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  3920868 ttatcatcatagctactatgacatatttccgttgtatttatagtttgaatgatcaaag 3920925  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 98 - 255
Target Start/End: Complemental strand, 826028 - 825871
Alignment:
Q  98 tgacagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaagcccatgctttgagatcaaggtgctcttgaactttttcatc 197  Q
    ||||||||||||| |||| ||| || | |||  |||||||||||||||| |  |||||| ||||  |||| | |||||  ||||| | |||||| | |||    
T  826028 tgacagattcaagtagagcttttgtgattctagaaatatcaaaatcctcggtgacacaaacccagactttcaaatcaaaatgctcatcaactttcttatc 825929  T
Q  198 attgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgca 255  Q
    |||||||| |||| | |||||||||| |||||| ||||||||   |||||||||||||    
T  825928 attgtaaacaagtcgagcaagtgtcgatttaccaacacctccatcacctaaaattgca 825871  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 276
Target Start/End: Complemental strand, 29836804 - 29836585
Alignment:
Q  57 tcgaataatatcaagattattgttttcccatgcccttgaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaa 156  Q
    ||||| || |||||| |||||| | | |||| | ||||||||||||  ||||||||||| ||| |||||||| || ||||||||||| || || ||||||    
T  29836804 tcgaagaagatcaaggttattggtattccattctcttgaagtgacaacttcaaggagagatttggttactctcaacatatcaaaatcttcagacacacaa 29836705  T
Q  157 gcccatgctttgagatcaaggtgctcttgaactttttcatcattgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattgcag 256  Q
     ||||  |||  | |||||  || | || ||||| ||| |  ||||| |||||| | || || ||||||||||||| ||||||||| |||  ||||||      
T  29836704 acccagacttgtacatcaaaatgatttttaacttcttcctggttgtatataagtcgagcgagggtcgttttaccgatacctcccatgcctgtaattgcga 29836605  T
Q  257 caacgcctatattgttattg 276  Q
    | || |||||||| ||||||    
T  29836604 ctacacctatattattattg 29836585  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 253
Target Start/End: Original strand, 31679676 - 31679837
Alignment:
Q  92 ttgaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcctctgatacacaagcccatgctttgagatcaaggtgctcttgaacttt 191  Q
    ||||||||| ||||||||| | |||| | ||||| || |||| |||||| || || || | |||| |||| ||||| | |||||   | |||||||| |     
T  31679676 ttgaagtgatagattcaagtaaagttctggttaccctcaaaacatcaaactcttcggacagacaaacccaagcttttacatcaaaacgttcttgaacatc 31679775  T
Q  192 ttcatcattgtaaataagttgtgcaagtgtcgttttaccgacacctcccatacctaaaattg 253  Q
    || ||||||||||| |||||| || || |  |||||||||||||||||||| || |||||||    
T  31679776 tttatcattgtaaagaagttgagctagggctgttttaccgacacctcccatgccgaaaattg 31679837  T

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