View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1273_low_18 (Length: 366)
Name: NF1273_low_18
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1273_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 112 - 364
Target Start/End: Original strand, 37220809 - 37221061
Alignment:
| Q |
112 |
aaatctcaatatattatcatggtacactcacaggtccttacatttgacttaaacnnnnnnntaatagttgattggtttgtatgaattttaatattaatat |
211 |
Q |
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| T |
37220809 |
aaatctcaatatattatcatggtacactcacaggtccttacatttgacttaaacaaaaaaataatagttgattggtttgtatgaattttaatattaatat |
37220908 |
T |
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| Q |
212 |
tattaagagttataattggaatgttcatatctcacaactggcagatttagatgtctttctcaaaatcctatttccattttccatatagcatgcataattg |
311 |
Q |
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| T |
37220909 |
taataagagttataattggaatgttcatatctcacaactggaagatttagatgtctttctcaaaatcctatttccattttccatatagcatgcataattg |
37221008 |
T |
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| Q |
312 |
ctaacaccaatttacatattcaagacacccaaattcttatctgttttcatatt |
364 |
Q |
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| T |
37221009 |
ctaacaccagtttacatattcaagacacccaaattcttatctgtgttcatatt |
37221061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 37220498 - 37220623
Alignment:
| Q |
1 |
attatgaaatccaaaaatcttttaaaaaactcaacatatattatatgtcaatcacaacaaaaactaagactctgtcaaatcctcctacgggttatttatt |
100 |
Q |
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| T |
37220498 |
attatgaaatccaaaaatcttttaaaaaactcaacatatattatatttcaatgacaacaataactaagactctgtcaaatcctcctacgggttatttatt |
37220597 |
T |
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| Q |
101 |
tattttgttcaaaatctcaatatatt |
126 |
Q |
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| T |
37220598 |
tattttgttcaaaatctcaatatatt |
37220623 |
T |
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