View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1273_low_19 (Length: 364)
Name: NF1273_low_19
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1273_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 21191911 - 21191674
Alignment:
| Q |
13 |
aatatagaaagatgtatgttgtgataatgtgaaacaaaataaaaaccattcttaacatgtatatacatatttcttcataaaatcaaaacaatatctatag |
112 |
Q |
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| T |
21191911 |
aatatagaaagatgtatgttgtgataatgtgaaagaaaataaaaaccattcttaacatgtatattcatatttcttcaaaaaatcaaaacaatatctatag |
21191812 |
T |
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| Q |
113 |
atgaataccaagaaaaacacacctcattttcgttccttgcattggaatattctctatcatccagtttgttgctaggagaaatctttgtgagaagatctaa |
212 |
Q |
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| T |
21191811 |
atgaacaccaagaaaaacatacctcattttcgttccttgcattggaatattctctatcatccagtttgttgctaggagaaatctttgtgagaagatctaa |
21191712 |
T |
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| Q |
213 |
actagtctacaaaatcaaagtggaagatctaaattagt |
250 |
Q |
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| T |
21191711 |
actagtctacaaaatcaaagtggaagatctaaattagt |
21191674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 293 - 335
Target Start/End: Complemental strand, 21191588 - 21191546
Alignment:
| Q |
293 |
tacatacatctacgtgatgatgctccatttggtgtagtgttag |
335 |
Q |
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| T |
21191588 |
tacatacatctacgtgatgatgctccatttggtgtagtgttag |
21191546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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