View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1273_low_2 (Length: 581)
Name: NF1273_low_2
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1273_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 12 - 489
Target Start/End: Original strand, 544391 - 544866
Alignment:
| Q |
12 |
taatatggtgaaacatggacatattatacaaccctcaacaattgtgctttatggaaatttctggtgctttatttttcctgctaatgtaattaatcatctg |
111 |
Q |
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| T |
544391 |
taatatggtgaaacatggacatattatacaaccctcaacaattgtgctttatggaaatttctggtgctttatttttcctgctaatgtaattaatcatctg |
544490 |
T |
|
| Q |
112 |
at-atcagacagtgacatattaacatgaggtgtagagaaatttacaaaaggtcagtatggcataaaaattgtgtgcactgatgaaaaatactcgtctttt |
210 |
Q |
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| T |
544491 |
attatcagacagtgacatattaacatgaggtgcagagaaatttacaaaaggtcagtatggcataaaaattgtgtgcactgatgaaaaatactcgtctttt |
544590 |
T |
|
| Q |
211 |
gattagggagtgttattagagagggtatattccagttcctcaagcttctgttaaaaatttgattgacatggtgattgaatttcagaaggtttctttaaca |
310 |
Q |
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| T |
544591 |
gattagggattgttattagagagggtatattccagttcctcaagcttctgttaaaaatttgattgacatggtgattgaatttcagaaggtttctttaaca |
544690 |
T |
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| Q |
311 |
attaccgggcttggataacaaagcaactacgtttcctcaccatatgcgtaattttttgtataagaaaaatattagtaaattagtgattttggtagttctt |
410 |
Q |
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| T |
544691 |
---accgggcttggataacaaagcaactacgtttcctcaccatatgcgtaattttttgtataagaaaaatattagtaaattagtgattttggtagttctt |
544787 |
T |
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| Q |
411 |
cgagattgtgtctcaacctctccttgttagaactctttcagtgtccctcaactcatcaacagagttgtctacttgtaag |
489 |
Q |
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| T |
544788 |
cgagattgtgtctcaacctctccttgttagaactctttcagtgtccctcaactcatcaacagagttgtctacttgtaag |
544866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 544286 - 544324
Alignment:
| Q |
124 |
gacatattaacatgaggtgtagagaaatttacaaaaggt |
162 |
Q |
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| T |
544286 |
gacatattaacatgaggtgcagataaatttacaaaaggt |
544324 |
T |
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