View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1273_low_20 (Length: 354)
Name: NF1273_low_20
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1273_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 93 - 256
Target Start/End: Original strand, 44386131 - 44386296
Alignment:
| Q |
93 |
acatataaatggcaattgaatgtagaaaccaaaatcatatgaatatgctgtcnnnnnnnngtattcaaatattcatatagatttagctccctcaaaacaa |
192 |
Q |
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| T |
44386131 |
acatataaatggcaattgaatgtagaaaccaaaatcatacgaatatgctgtcaaaaaaa-gtattcaaatatgcatatagatttagctccctcaaaacaa |
44386229 |
T |
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| Q |
193 |
aaaag---gatatagatttagtagaattttgttgcaccttatttaactgaagcttgtgcgtcaagtc |
256 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44386230 |
aaaaaaaagatatagatttagtagaattttgttgcaccttatttaactgaagcttgtgcgtcaagtc |
44386296 |
T |
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